The Anti-fluorescein Antibody Active Site: A Single-chain Site-specific Mutagenesis Study


Book Description

Crystallographic studies of high affinity anti-fluorescein monoclonal antibody 4-4-20 (K$\sb{\rm a}$ = 1.7 10$\sp{10}$ M$\sp{-1}$) complexed with fluorescyl ligand defined the six antibody active site contact residues involved in FI binding. For better definition of the relative role of each antigen contact residue in high affinity FI binding, each contact residue was changed to various amino acids in the single chain derivative of Mab 4-4-20 and following expression in Escherichia coli, denaturation, refolding and purification, each SCA (single chain antibody) mutant was characterized in terms of FI binding affinity, Q$\sb{\rm max}$ (maximum fluorescein fluorescence quenching), $\lambda\sb{\rm max}$ (Absorption maxima) and idiotype. Alanine substitutions at the six ligand-contact residues reduced the SCA binding affinities and quenching maxima for all the Ala mutants except L27d which retained wild type binding characteristics. Results of Ala substitution mutagenesis suggested that L32$\sp{\rm Tyr}$, L91$\sp{\rm Ser}$ and H33$\sp{\rm Trp}$ are most important for high affinity FI binding and efficient FI quenching. Substitution of Tyr and Phe at residue H33 resulted in binding affinities that were greater than that obtained from the H33$\sp{\rm Ala}$ mutant and suggested that another aromatic amino acid could substitute for Trp this residue. A phenylalanine substitution at L32$\sp{\rm Tyr}$, which disrupted the Tyr hydrogen bond with fluorescyl ligand, resulted in a decreased the binding affinity ($\sim$30-fold), but did not effect the quenching maxima. Finally, other amino acid substitutions at L34$\sp{\rm Arg}$, L91$\sp{\rm Ser}$ and L27d$\sp{\rm His}$ resulted in SCA mutants that possessed lower binding affinities and quenching maxima than that obtained for the respective Ala mutant.




The Immunoglobulins


Book Description

This book provides comprehensive up-to-date information on the structure and function of immunoglobulins. It describes the basic features of these molecules, which assists the reader in understanding how they function as an integral part of the immune system. The Immunoglobulins describes the localization and structure of different binding sites of immunoglobulin molecules, including the antigen-binding site, on the basis of latest x-ray crystallography studies. It discusses recently developed biotechnological methods that allow scientists to obtain fully active antibody molecules in vitro even without immunization and to construct new variants of immunoglobulins and their fragments by fusing with various other active molecules. A survey of recent knowledge on immunoglobulin-binding molecules other than antigens and on flexibility of immunoglobulin molecules concludes the discussion of functional aspects of the problem. Describes recent reviews on the structure and function of immunoglobulin molecules of various species Summarizes in detail recent findings on the fine structure of the antigen-combining site Presents comparative data on the antigen-recognizing sites of other molecules such as MHC proteins and T-cell receptors Summarizes growing data on immunoglobulin binding sites responsible for the reaction of immunoglobulins with molecules other than antigens Explores the rapid advance of recent biotechnological methods used for the construction of antibody molecules and their fragments with new properties Presents extensive references and is lavishly illustrated




Master's Theses Directories


Book Description

"Education, arts and social sciences, natural and technical sciences in the United States and Canada".







Antigen Binding Molecules: Antibodies and T-Cell Receptors


Book Description

Topics Covered Include: X-ray crystallography of ligands. Catalytic antibodies. Nature of the antigen. Antibody binding sites. Maturation of the immune response. Computational biochemistry of antibodies and T-cell receptors. Antigen-specific T-cell receptors and their reactions. Key Features * X-Ray Crystallography of Ligands * Catalytic Antibodies * Nature of the Antigen * Antibody Binding Sites * Maturtion of the Immune Response * Computational Biochemistry of Antibodies and * T-Cell Receptors * Antigen-Specific T-Cell Receptors and Their Reactions







Immunoassay


Book Description

Immunoassays are among the most powerful and sensitive technologies now available for patient diagnosis and monitoring. This book is an indispensable guide to information on the theory and practice of immunoassays. It discusses the scientific basis of these technologies in a logical, organized, and heuristic manner and provides protocols for specific assays. The contents of this unique book are balanced among theory, practical issues, quality control, automation, and subspecialty areas, making it ideal for health science students, laboratory scientists, and clinicians. Presents up-to-date information Provides extensive cross-referencing Covers theory and practice in full detail Written by leading authorities




Proceedings of the National Academy of Sciences of the United States of America


Book Description

The Proceedings of the National Academy of Sciences (PNAS) publishes research reports, commentaries, reviews, colloquium papers, and actions of the Academy. PNAS is a multidisciplinary journal that covers the biological, physical, and social sciences.




Innovations and Implementations of Computer Aided Drug Discovery Strategies in Rational Drug Design


Book Description

This book presents various computer-aided drug discovery methods for the design and development of ligand and structure-based drug molecules. A wide variety of computational approaches are now being used in various stages of drug discovery and development, as well as in clinical studies. Yet, despite the rapid advances in computer software and hardware, combined with the exponential growth in the available biological information, there are many challenges that still need to be addressed, as this book shows. In turn, it shares valuable insights into receptor-ligand interactions in connection with various biological functions and human diseases. The book discusses a wide range of phylogenetic methods and highlights the applications of Molecular Dynamics Simulation in the drug discovery process. It also explores the application of quantum mechanics in order to provide better accuracy when calculating protein-ligand binding interactions and predicting binding affinities. In closing, the book provides illustrative descriptions of major challenges associated with computer-aided drug discovery for the development of therapeutic drugs. Given its scope, it offers a valuable asset for life sciences researchers, medicinal chemists and bioinformaticians looking for the latest information on computer-aided methodologies for drug development, together with their applications in drug discovery.