Digital brain atlases


Book Description




Atlas of the Human Brain


Book Description

Accompanying DVD-ROM contains ... "the atlas in electronic format, but also a 3-D visualization software that allows easy browsing of the images, and a feature to allow direct retrieval of brain areas using coordinates obtained in magnetic resonance imaging."--P. [4] of cover.




A Combined MRI and Histology Atlas of the Rhesus Monkey Brain in Stereotaxic Coordinates


Book Description

A Combined MRI and Histology Atlas of the Rhesus Monkey Brain in Stereotaxic Coordinates, Second Edition maps the detailed architectonic subdivisions of the cortical and subcortical areas in the macaque monkey brain using high-resolution magnetic resonance (MR) images and the corresponding histology sections in the same animal. This edition of the atlas is unlike anything else available as it includes the detailed cyto- and chemoarchitectonic delineations of the brain areas in all three planes of sections (horizontal, coronal, and sagittal) that are derived from the same animal. This is a significant progress because in functional imaging studies, such as fMRI, both the horizontal and sagittal planes of sections are often the preferred planes given that multiple functionally active regions can be visualized simultaneously in a single horizontal or sagittal section. This combined MRI and histology atlas is designed to provide an easy-to-use reference for anatomical and physiological studies in macaque monkeys, and in functional-imaging studies in human and non-human primates using fMRI and PET. The first rhesus monkey brain atlas with horizontal, coronal, and sagittal planes of sections, derived from the same animal Shows the first detailed delineations of the cortical and subcortical areas in horizontal, coronal, and sagittal plane of sections in the same animal using different staining methods Horizonal series illustrates the dorsoventral extent of the left hemisphere in 47 horizontal MRI and photomicrographic sections matched with 47 detailed diagrams (Chapter 3) Coronal series presents the full rostrocaudal extent of the right hemisphere in 76 coronal MRI and photomicrographic sections, with 76 corresponding drawings (Chapter 4) Sagittal series shows the complete mediolateral extent of the left hemisphere in 30 sagittal MRI sections, with 30 corresponding drawings (Chapter 5). The sagittal series also illustrates the location of different fiber tracts in the white matter Individual variability - provides selected cortical and subcortical areas in three-dimensional MRI (horizontal, coronal, and sagittal MRI planes). For comparison, it also provides similar areas in coronal MRI section in six other monkeys. (Chapter 6) Vasculature - indicates the corresponding location of all major blood vessels in horizontal, coronal, and sagittal series of sections Provides updated information on the cortical and subcortical areas, such as architectonic areas and nomenclature, with references, in chapter 2 Provides the sterotaxic grid derived from the in-vivo MR image




Cyto- and Myeloarchitectural Brain Atlas of the Ferret (Mustela putorius) in MRI Aided Stereotaxic Coordinates


Book Description

Description This stereotaxic atlas of the ferret brain provides detailed architectonic subdivisions of the cortical and subcortical areas in the ferret brain using high-quality histological material stained for cells and myelin together with in vivo magnetic resonance (MR) images of the same animal. The skull-related position of the ferret brain was established according to in vivo MRI and additional CT measurements of the skull. Functional denotations from published physiology and connectivity studies are mapped onto the atlas sections and onto the brain surface, together with the architectonic subdivisions. High-resolution MR images are provided at levels of the corresponding histology atlas plates with labels of the respective brain structures. The book is the first atlas of the ferret brain and the most detailed brain atlas of a carnivore available to date. It provides a common reference base to collect and compare data from any kind of research in the ferret brain. Key Features Provides the first ferret brain atlas with detailed delineations of cortical and subcortical areas in frontal plane. Provides the most detailed brain atlas of a carnivore to date. Presents a stereotaxic atlas coordinate system derived from high-quality histological material and in vivo magnetic resonance (MR) images of the same animal. Covers the ferret brain from forebrain to spinal cord at intervals of 0.6 mm on 58 anterior-posterior levels with 5 plates each. Presents cell (Nissl) stained frontal sections (plate 1) and myelin stained sections (plate 2) in a stereotaxic frame. Provides detailed delineations of brain structures and their denomination on a Nissl stained background on a separate plate (3). Compiles abbreviations on plate 4, a plate that also displays the low resolution MRI of the atlas brain with the outlines of the Nissl sections in overlay. Displays high-resolution MR images at intervals of 0.15 mm from another animal with labeled brain structures as plate 5 corresponding to the anterior-posterior level of each atlas plate. Provides detailed references used for delineation of brain areas. Target audience of the book: The book addresses researchers and students in neurosciences who are interested in brain anatomy in general (e.g., for translational purposes/comparative aspects), particularly those who study the ferret as important animal model of growing interest in neurosciences.




The Rhesus Monkey Brain in Stereotaxic Coordinates


Book Description

The Rhesus Monkey Brain in Stereotaxic Coordinates is the most comprehensive and accurate atlas of the monkey brain. The fourth edition of this classic book is a complete revision featuring many improvements and upgrades. Constructed by the established leaders in neuroanatomical atlas development, the new edition will continue to be the indispensable resource for all scientists working on the primate nervous system. - 141 completely revised coronal diagrams and accompanying colour photographic plates spaced at approximately 120 μm intervals - 60 colour photographic coronal plates of SMI immunoreactivity with completely revised delineations - Includes MR images at approximately the same levels as the coronal diagrams - Follows the same nomenclature and abbreviations as the mouse, rat, chicken, marmoset and human brain atlases, with indications of correspondence to alternative macaque nomenclatures - This atlas was used for the delineation and nomenclature of MRI-based macaque brain atlases for neuroimaging analyses, including the SARM




MRI/DTI Atlas of the Rat Brain


Book Description

MRI/DTI Atlas of the Rat Brain offers two major enhancements when compared with earlier attempts to make MRI/DTI rat brain atlases. First, the spatial resolution at 25μm is considerably higher than previous data published. Secondly, the comprehensive set of MRI/DTI contrasts provided has enabled the authors to identify more than 80% of structures identified in The Rat Brain in Stereotaxic Coordinates. - Ninety-six coronal levels from the olfactory bulb to the pyramidal decussation are depicted - Delineations primarily made on the basis of direct observations on the MRI contrasts - Each of the 96 open book pages displays four items— top left, the directionally colored fractional anisotropy image derived from DTI (DTI - FAC); top right, the diffusion-weighted image (DWI); bottom left, the gradient recalled echo (GRE); and bottom right, a diagrammatic synthesis of the information derived from these three images plus two additional images, which are not displayed (ARDC and RD). This is repeated for 96 coronal levels, which makes the levels 250 μm apart - The FAC images are shown in full color - The orientation of sections corresponds to that in Paxinos and Watson's The Rat Brain in Stereotaxic Coordinates, 7th Edition (2014) - The images have been obtained from 3D isotropic population averages (number of rats=5). All abbreviations of structure names are identical to the Paxinos & Watson histologic atlas







Atlas of the Developing Mouse Brain


Book Description

Atlas of the Developing Mouse Brain, Second Edition builds on the features of successful first edition, providing a comprehensive and convenient reference for all areas of the mouse brain at Fetal-Day 17.5 (E17.5), Day-of-Birth (P0), and Day-Six postnatal (P6). The book also delineates the parts of the eye, features of the skull, ganglia, nerves, arteries, veins, bones and foramina. This atlas is an essential tool for researchers and students who study the development of the mouse brain, or for those who interpret findings from genetic manipulation. - Contains 176 high-resolution color scans of Nissl-stained coronal sections of the brain and skull of the fetal (E17.5), day-of-birth (P0), and day-six postnatal mouse (P6) - Includes diagrams that delineate all structures of the brain, as well as peripheral nerves, ganglia, muscles, bones, veins and arteries of the head - Presents approximately 5000 corrections and updates from the first edition - Includes color codes of the veins, arteries, nerves and ganglions of the skull in diagrams




The Brain Atlas


Book Description

The Brain Atlas: A Visual Guide to the Human Central Nervous System integrates modern neuroscience with clinical practice and is now significantly revised and updated for a Fourth Edition. The book's five sections cover: Background Information, The Brain and Its Blood Vessels, Brain Slices, Histological Sections, and Pathways. These are depicted in over 350 high quality intricate figures making it the best available visual guide to human neuroanatomy.




Atlas of the Morphology of the Human Cerebral Cortex on the Average MNI Brain


Book Description

Atlas of the Morphology of the Human Cerebral Cortex on the Average MNI Brain provides a comprehensive identification of the sulci and gyri of the human brain on a series of coronal sections of the average MNI brain and identifies the likely location of the cytoarchitectonic areas of the cerebral cortex. Presentation in MNI Stereotaxic Space enables the atlas to serve as a useful working tool for structural/functional neuroimagers attempting to identify the sulcus or gyrus and the likely cytoarchitectonic area within which a functional activation or a structural change has occurred. A brief introductory section discusses the history and current state of studies of the sulcal and gyral morphology and cytoarchitecture of the human cerebral cortex. - Identifies all sulci and gyri of both hemispheres of the average MNI brain (rather than those of a single brain with its individual peculiarities) so that the average surface morphology of the human cerebral cortex is clearly revealed - Presents the likely location of architectonic areas on the average MNI brain so that researchers can report their findings in a manner that is readily translatable from laboratory to laboratory - Offers succinct commentary on the relation of sulci and gyri to architectonic areas, which will be useful to those looking to identify the cortical area within which functional or structural changes occurred - Offers succinct commentaries on the diversity of names often used to refer to the exact same area that will be useful to those struggling to navigate the often confusing cerebral cortex nomenclature