Multivariate Data Integration Using R


Book Description

Large biological data, which are often noisy and high-dimensional, have become increasingly prevalent in biology and medicine. There is a real need for good training in statistics, from data exploration through to analysis and interpretation. This book provides an overview of statistical and dimension reduction methods for high-throughput biological data, with a specific focus on data integration. It starts with some biological background, key concepts underlying the multivariate methods, and then covers an array of methods implemented using the mixOmics package in R. Features: Provides a broad and accessible overview of methods for multi-omics data integration Covers a wide range of multivariate methods, each designed to answer specific biological questions Includes comprehensive visualisation techniques to aid in data interpretation Includes many worked examples and case studies using real data Includes reproducible R code for each multivariate method, using the mixOmics package The book is suitable for researchers from a wide range of scientific disciplines wishing to apply these methods to obtain new and deeper insights into biological mechanisms and biomedical problems. The suite of tools introduced in this book will enable students and scientists to work at the interface between, and provide critical collaborative expertise to, biologists, bioinformaticians, statisticians and clinicians.







Using R With Multivariate Statistics


Book Description

Using R with Multivariate Statistics by Randall E. Schumacker is a quick guide to using R, free-access software available for Windows and Mac operating systems that allows users to customize statistical analysis. Designed to serve as a companion to a more comprehensive text on multivariate statistics, this book helps students and researchers in the social and behavioral sciences get up to speed with using R. It provides data analysis examples, R code, computer output, and explanation of results for every multivariate statistical application included. In addition, R code for some of the data set examples used in more comprehensive texts is included, so students can run examples in R and compare results to those obtained using SAS, SPSS, or STATA. A unique feature of the book is the photographs and biographies of famous persons in the field of multivariate statistics.




Exploratory Multivariate Analysis by Example Using R


Book Description

Full of real-world case studies and practical advice, Exploratory Multivariate Analysis by Example Using R focuses on four fundamental methods of multivariate exploratory data analysis that are most suitable for applications. It covers principal component analysis (PCA) when variables are quantitative, correspondence analysis (CA) and multiple correspondence analysis (MCA) when variables are categorical, and hierarchical cluster analysis. The authors take a geometric point of view that provides a unified vision for exploring multivariate data tables. Within this framework, they present the principles, indicators, and ways of representing and visualizing objects that are common to the exploratory methods. The authors show how to use categorical variables in a PCA context in which variables are quantitative, how to handle more than two categorical variables in a CA context in which there are originally two variables, and how to add quantitative variables in an MCA context in which variables are categorical. They also illustrate the methods and the ways they can be exploited using examples from various fields. Throughout the text, each result correlates with an R command accessible in the FactoMineR package developed by the authors. All of the data sets and code are available at http://factominer.free.fr/book By using the theory, examples, and software presented in this book, readers will be fully equipped to tackle real-life multivariate data.




Chemometrics with R


Book Description

This book offers readers an accessible introduction to the world of multivariate statistics in the life sciences, providing a comprehensive description of the general data analysis paradigm, from exploratory analysis (principal component analysis, self-organizing maps and clustering) to modeling (classification, regression) and validation (including variable selection). It also includes a special section discussing several more specific topics in the area of chemometrics, such as outlier detection, and biomarker identification. The corresponding R code is provided for all the examples in the book; and scripts, functions and data are available in a separate R package. This second revised edition features not only updates on many of the topics covered, but also several sections of new material (e.g., on handling missing values in PCA, multivariate process monitoring and batch correction).




Applied Multivariate Statistics with R


Book Description

This book brings the power of multivariate statistics to graduate-level practitioners, making these analytical methods accessible without lengthy mathematical derivations. Using the open source, shareware program R, Professor Zelterman demonstrates the process and outcomes for a wide array of multivariate statistical applications. Chapters cover graphical displays, linear algebra, univariate, bivariate and multivariate normal distributions, factor methods, linear regression, discrimination and classification, clustering, time series models, and additional methods. Zelterman uses practical examples from diverse disciplines to welcome readers from a variety of academic specialties. Those with backgrounds in statistics will learn new methods while they review more familiar topics. Chapters include exercises, real data sets, and R implementations. The data are interesting, real-world topics, particularly from health and biology-related contexts. As an example of the approach, the text examines a sample from the Behavior Risk Factor Surveillance System, discussing both the shortcomings of the data as well as useful analyses. The text avoids theoretical derivations beyond those needed to fully appreciate the methods. Prior experience with R is not necessary.




An R and S-Plus® Companion to Multivariate Analysis


Book Description

Applied statisticians often need to perform analyses of multivariate data; for these they will typically use one of the statistical software packages, S-Plus or R. This book sets out how to use these packages for these analyses in a concise and easy-to-use way, and will save users having to buy two books for the job. The author is well-known for this kind of book, and so buyers will trust that he’s got it right.




Univariate, Bivariate, and Multivariate Statistics Using R


Book Description

A practical source for performing essential statistical analyses and data management tasks in R Univariate, Bivariate, and Multivariate Statistics Using R offers a practical and very user-friendly introduction to the use of R software that covers a range of statistical methods featured in data analysis and data science. The author— a noted expert in quantitative teaching —has written a quick go-to reference for performing essential statistical analyses and data management tasks in R. Requiring only minimal prior knowledge, the book introduces concepts needed for an immediate yet clear understanding of statistical concepts essential to interpreting software output. The author explores univariate, bivariate, and multivariate statistical methods, as well as select nonparametric tests. Altogether a hands-on manual on the applied statistics and essential R computing capabilities needed to write theses, dissertations, as well as research publications. The book is comprehensive in its coverage of univariate through to multivariate procedures, while serving as a friendly and gentle introduction to R software for the newcomer. This important resource: Offers an introductory, concise guide to the computational tools that are useful for making sense out of data using R statistical software Provides a resource for students and professionals in the social, behavioral, and natural sciences Puts the emphasis on the computational tools used in the discovery of empirical patterns Features a variety of popular statistical analyses and data management tasks that can be immediately and quickly applied as needed to research projects Shows how to apply statistical analysis using R to data sets in order to get started quickly performing essential tasks in data analysis and data science Written for students, professionals, and researchers primarily in the social, behavioral, and natural sciences, Univariate, Bivariate, and Multivariate Statistics Using R offers an easy-to-use guide for performing data analysis fast, with an emphasis on drawing conclusions from empirical observations. The book can also serve as a primary or secondary textbook for courses in data analysis or data science, or others in which quantitative methods are featured.




Making Sense of Multivariate Data Analysis


Book Description

A short introduction to the subject, this text is aimed at students & practitioners in the behavioural & social sciences. It offers a conceptual overview of the foundations of MDA & of a range of specific techniques including multiple regression, logistic regression & log-linear analysis.




Exploratory Multivariate Analysis by Example Using R


Book Description

An introduction to exploratory techniques for multivariate data analysis, this text covers the key methodology, including principal components analysis, correspondence analysis, mixed models, and multiple factor analysis.