Modeling and Development of Iterative Reconstruction Algorithms in Emerging X-ray Imaging Technologies


Book Description

Many new promising X-ray-based biomedical imaging technologies have emerged over the last two decades. Five different novel X-ray based imaging technologies are discussed in this dissertation: differential phase-contrast tomography (DPCT), grating-based phase-contrast tomography (GB-PCT), spectral-CT (K-edge imaging), cone-beam computed tomography (CBCT), and in-line X-ray phase contrast (XPC) tomosynthesis. For each imaging modality, one or more specific problems prevent them being effectively or efficiently employed in clinical applications have been discussed. Firstly, to mitigate the long data-acquisition times and large radiation doses associated with use of analytic reconstruction methods in DPCT, we analyze the numerical and statistical properties of two classes of discrete imaging models that form the basis for iterative image reconstruction. Secondly, to improve image quality in grating-based phase-contrast tomography, we incorporate 2nd order statistical properties of the object property sinograms, including correlations between them, into the formulation of an advanced multi-channel (MC) image reconstruction algorithm, which reconstructs three object properties simultaneously. We developed an advanced algorithm based on the proximal point algorithm and the augmented Lagrangian method to rapidly solve the MC reconstruction problem. Thirdly, to mitigate image artifacts that arise from reduced-view and/or noisy decomposed sinogram data in K-edge imaging, we exploited the inherent sparseness of typical K-edge objects and incorporated the statistical properties of the decomposed sinograms to formulate two penalized weighted least square problems with a total variation (TV) penalty and a weighted sum of a TV penalty and an l1-norm penalty with a wavelet sparsifying transform. We employed a fast iterative shrinkage/thresholding algorithm (FISTA) and splitting-based FISTA algorithm to solve these two PWLS problems. Fourthly, to enable advanced iterative algorithms to obtain better diagnostic images and accurate patient positioning information in image-guided radiation therapy for CBCT in a few minutes, two accelerated variants of the FISTA for PLS-based image reconstruction are proposed. The algorithm acceleration is obtained by replacing the original gradient-descent step by a sub-problem that is solved by use of the ordered subset concept (OS-SART). In addition, we also present efficient numerical implementations of the proposed algorithms that exploit the massive data parallelism of multiple graphics processing units (GPUs). Finally, we employed our developed accelerated version of FISTA for dealing with the incomplete (and often noisy) data inherent to in-line XPC tomosynthesis which combines the concepts of tomosynthesis and in-line XPC imaging to utilize the advantages of both for biological imaging applications. We also investigate the depth resolution properties of XPC tomosynthesis and demonstrate that the z-resolution properties of XPC tomosynthesis is superior to that of conventional absorption-based tomosynthesis. To investigate all these proposed novel strategies and new algorithms in these different imaging modalities, we conducted computer simulation studies and real experimental data studies. The proposed reconstruction methods will facilitate the clinical or preclinical translation of these emerging imaging methods.




Statistical Modeling and Path-based Iterative Reconstruction for X-ray Computed Tomography


Book Description

X-ray computed tomography (CT) and tomosynthesis systems have proven to be indispensable components in medical diagnosis and treatment. My research is to develop advanced image reconstruction and processing algorithms for the CT and tomosynthesis systems. Streak artifacts caused by metal objects such as dental fillings, surgical instruments, and orthopedic hardware may obscure important diagnostic information in X-ray computed tomography (CT) images. To improve the image quality, we proposed to complete the missing kilovoltage (kV) projection data with selectively acquired megavoltage (MV) data that do not suffer from photon starvation. We developed two statistical image reconstruction methods, dual-energy penalized weighted least squares and polychromatic maximum likelihood, for combining kV and selective MV data. Cramer-Rao Lower Bound for Compound Poisson was studied to revise the statistical model and minimize radiation dose. Numerical simulations and phantom studies have shown that the combined kV/MV imaging systems enable a better delineation of structures of interest in CT images for patients with metal objects. The x-ray tube on the CT system produces a wide x-ray spectrum. Polychromatic statistical CT reconstruction is desired for more accurate quantitative measurement of the chemical composition and density of the tissue. Polychromatic statistical reconstruction algorithms usually have very high computational demands due to complicated optimization frameworks and the large number of spectrum bins. We proposed a spectrum information compression method and a new optimization framework to significantly reduce the computational cost in reconstructions. The new algorithm applies to multi-material beam hardening correction, adaptive exposure control, and spectral imaging. Model-based iterative reconstruction (MBIR) techniques have demonstrated many advantages in X-ray CT image reconstruction. The MBIR approach is often modeled as a convex optimization problem including a data fitting function and a penalty function. The tuning parameter value that regulates the strength of the penalty function is critical for achieving good reconstruction results but is difficult to choose. We have developed two path seeking algorithms that are capable of generating a path of MBIR images with different strengths of the penalty function. The errors of the proposed path seeking algorithms are reasonably small throughout the entire reconstruction path. With the efficient path seeking algorithm, we suggested a path-based iterative reconstruction (PBIR) to obtain complete information from the scanned data and reconstruction model. Additionally, we have developed a convolution-based blur-and-add model for digital tomosynthesis systems that can be used in efficient system analysis, task-dependent optimization, and filter design. We also proposed a computationally practical algorithm to simulate and subtract out-of-plane artifacts in tomosynthesis images using patient-specific prior CT volumes.




Fundamentals of Computerized Tomography


Book Description

This revised and updated second edition – now with two new chapters - is the only book to give a comprehensive overview of computer algorithms for image reconstruction. It covers the fundamentals of computerized tomography, including all the computational and mathematical procedures underlying data collection, image reconstruction and image display. Among the new topics covered are: spiral CT, fully 3D positron emission tomography, the linogram mode of backprojection, and state of the art 3D imaging results. It also includes two new chapters on comparative statistical evaluation of the 2D reconstruction algorithms and alternative approaches to image reconstruction.




Medical Image Reconstruction


Book Description

This textbook introduces the essential concepts of tomography in the field of medical imaging. The medical imaging modalities include x-ray CT (computed tomography), PET (positron emission tomography), SPECT (single photon emission tomography) and MRI. In these modalities, the measurements are not in the image domain and the conversion from the measurements to the images is referred to as the image reconstruction. The work covers various image reconstruction methods, ranging from the classic analytical inversion methods to the optimization-based iterative image reconstruction methods. As machine learning methods have lately exhibited astonishing potentials in various areas including medical imaging the author devotes one chapter to applications of machine learning in image reconstruction. Based on college level in mathematics, physics, and engineering the textbook supports students in understanding the concepts. It is an essential reference for graduate students and engineers with electrical engineering and biomedical background due to its didactical structure and the balanced combination of methodologies and applications,




Iterative Reconstruction Framework for High-resolution X-ray CT Data


Book Description

Small animal medical imaging has become an important tool for researchers as it allows noninvasively screening animal models for pathologies as well as monitoring disease progression and therapy response. Currently, clinical CT scanners typically use a Filtered Backprojection (FBP) based method for image reconstruction. This algorithm is fast and generally produces acceptable results, but has several drawbacks. Firstly, it is based upon line integrals, which do not accurately describe the process of X-ray attenuation. Secondly, noise in the projection data is not properly modeled with FBP. On the other hand, iterative algorithms allow the integration of more complicated system models as well as robust scatter and noise correction techniques. Unfortunately, the iterative algorithms also have much greater computational demands than their FBP counterparts. In this thesis, we develop a framework to support iterative reconstructions of high-resolution X-ray CT data. This includes exploring various system models and algorithms as well as developing techniques to manage the significant computational and system storage requirements of the iterative algorithms. Issues related to the development of this framework as well as preliminary results are presented.




Tomosynthesis Imaging


Book Description

An innovative, three-dimensional x-ray imaging technique that enhances projection radiography by adding depth resolution, Tomosynthesis Imaging explores tomosynthesis, an emerging limited-angle tomographic imaging technology that is being considered for use in a range of clinical applications, and is currently being used for breast cancer screening and diagnosis. While conventional mammography has been very successful in reducing breast cancer mortality, it is not perfect. A major limitation of mammography is that the recorded image represents the superposition of complex three-dimensional structures in the breast onto a two-dimensional plane, making detection and diagnosis of breast cancer challenging. Tomosynthesis produces quasi-three-dimensional images that can significantly enhance the visualization of important diagnostic features. This book highlights the flexibility of tomosynthesis systems for new clinical applications, and provides a detailed discussion of the tomosynthesis acquisition process and the impact of physical factors. It explores such topics as acquisition parameters, system components, modeling, image reconstruction algorithms, and system evaluation. Provides in-depth coverage of system design considerations, as well as image reconstruction strategies Describes the current state of clinical applications of tomosynthesis, including imaging of the breast and chest, as well as its use in radiotherapy Illustrates the merits of tomosynthesis imaging and its potential clinical applications in imaging of the breast and chest, as well as for radiation therapy Divided into five sections, this text delves into the history and development of tomosynthesis. It introduces tomosynthesis imaging, discusses imaging system design considerations, and reviews image reconstruction algorithms that have been developed for tomosynthesis. It also describes system evaluation methodologies, emphasizes current clinical applications, and examines the future direction for tomosynthesis.







Advanced Imaging in Biology and Medicine


Book Description

A picture says more than a thousand words. This is something that we all know to be true. Imaging has been important since the early days of medicine and bi- ogy, as seen in the anatomical studies of Leonardo Da Vinci or Andreas Vesalius. More than 100 years ago, the ?rst noninvasive imaging technologies, such as K- rad Roentgen’s X-ray technology,were applied to the medical ?eld—and while still crude—revolutionized medical diagnosis. Today, every patient will be exposed to some kind of advanced imaging technology such as medical resonance imaging, computed tomography or four-dimensional ultrasound during their lifetime. Many diseases, such as brain tumors, are initially diagnosed solely by imaging, and most of the surgical planning relies on the patient imagery. 4D ultrasound is available to expecting parents who wish to create unique early memories of the new baby, and it may soon be used for the morphometric diagnosis of malformations that may one day be treatable—inutero! Light and electron microscopy are unequal brethren, which have contributed to most of our knowledge about the existence and organization of cells, tissues and microorganisms. Every student of biology or medicine is introduced to the fascinating images of the microcosm. New advances have converted these im- ing technologies, which were considered by many to be antiquated, into powerful tools for research in systems biology and related ?elds.




Advanced and Emerging Technologies in Radiation Oncology Physics


Book Description

This new book educates readers about new technologies before they appear in hospitals, enabling medical physicists and clinicians to prepare for new technologies thoroughly and proactively, and provide better patient care once new equipment becomes available. Emerging technologies in imaging, treatment planning, treatment delivery, dosimetry and informatics are all discussed. The book is divided into three parts: recently developed technologies available for practice; technologies under development nearing completion; and technologies in an early stage of development that could have potential radiotherapy applications. Features: Introduces emerging technologies in imaging, treatment planning, treatment delivery, dosimetry and informatics The advantages and limitations of each technology in clinical settings are discussed, and recommendations on how to adopt the technologies are provided Critiques and improvement points are provided for researchers, in addition to suggestions on how to prepare quality assurance are provided as needed




Bayesian Iterative Reconstruction Methods for 3D X-ray Computed Tomography


Book Description

In industry, 3D X-ray Computed Tomography aims at virtually imaging a volume in order to inspect its interior. The virtual volume is obtained thanks to a reconstruction algorithm based on projections of X-rays sent through the industrial part to inspect. In order to compensate uncertainties in the projections such as scattering or beam-hardening, which are cause of many artifacts in conventional filtered backprojection methods, iterative reconstruction methods bring further information by enforcing a prior model on the volume to reconstruct, and actually enhance the reconstruction quality. In this context, this thesis proposes new iterative reconstruction methods for the inspection of aeronautical parts made by SAFRAN group. In order to alleviate the computational cost due to repeated projection and backprojection operations which model the acquisition process, iterative reconstruction methods can take benefit from the use of high-parallel computing on Graphical Processor Unit (GPU). In this thesis, the implementation on GPU of several pairs of projector and backprojector is detailed. In particular, a new GPU implementation of the matched Separable Footprint pair is proposed. Since many of SAFRAN's industrial parts are piecewise-constant volumes, a Gauss-Markov-Potts prior model is introduced, from which a joint reconstruction and segmentation algorithm is derived. This algorithm is based on a Bayesian approach which enables to explain the role of each parameter. The actual polychromacy of X-rays, which is responsible for scattering and beam-hardening, is taken into account by proposing an error-splitting forward model. Combined with Gauss-Markov-Potts prior on the volume, this new forward model is experimentally shown to bring more accuracy and robustness. At last, the estimation of the uncertainties on the reconstruction is investigated by variational Bayesian approach. In order to have a reasonable computation time, it is highlighted that the use of a matched pair of projector and backprojector is necessary.