Post-transcriptional Regulation of the Intestinal Epithelium by Tristetraprolin


Book Description

The intestinal epithelium absorbs nutrients and forms a barrier between luminal microorganisms and immune cells in the submucosa. Intestinal epithelial cells (IECs) are continuously replenished by intestinal stem cells, which generate both secretory and absorptive lineages of differentiated IECs. The expression of genes involved in IEC proliferation and differentiation must be precisely controlled to ensure epithelial barrier integrity and prevent malignancy. RNA-binding proteins fine-tune gene expression post-transcriptionally and have been implicated in the maintenance of IEC homeostasis. We investigated the role of RNA-binding protein, Tristetraprolin (TTP), encoded by the Zfp36 gene, in IEC homeostasis and disease. TTP binds to AU-rich elements in the 3UTR of a subset of mRNAs and targets them for degradation. Many established TTP target genes encode inflammatory modulators and proto-oncogenes, however it is unknown what genes are regulated by TTP in IECs. To elucidate a functional role for TTP in the intestinal epithelium, we generated IEC mice, which lack expression of Zfp36 in the IECs. We found that epithelial TTP is largely dispensable for intestinal homeostasis. However, the colons of IEC mice exhibit increased crypt depth and a mild expansion of the proliferative zone. Additionally, RNA-sequencing of colon tissue from control (Zfp36fl/fl) and IEC mice identified IEC-specific TTP target genes, including nitric oxide synthase 2 (Nos2), which, we demonstrate, is regulated by TTP through AU-rich elements in its 3UTR. Strikingly, upon DSS-induced colitis, IEC mice were protected from the pathologies associated with colitis, including weight loss, colon shortening, and perturbed colonic mucosal architecture. Additionally, IEC mice had enhanced tumor growth in AOM-DSS induced colitis-associated cancer. These findings uncover roles for TTP in IECs, including modulating Nos2 expression, regulating IEC regeneration, and suppressing tumor expansion.







Post-transcriptional Mechanisms in Endocrine Regulation


Book Description

This book examines how post-transcriptional mechanisms control endocrine function. This includes newly identified regulatory mechanisms involved in hormone biosynthesis, control of hormone receptors and the outputs of hormone mediated signal transduction. Chapters address endocrine hormones including protein peptide/peptide, steroid, and non-steroidal hormones. The impacts of these mechanisms on disease and health are covered, providing a novel update to the scientific literature. Post-transcriptional regulatory mechanisms play an essential role in controlling dynamic gene expression. The outcome of this regulation includes control of the amount, timing, and location of protein expression. Regulation is mediated by cis-acting RNA sequences and structures and transacting RNA binding proteins and non-coding RNAs, including microRNAs. Recent advances in characterization of these regulatory factors have revealed enormous regulatory potential.




Advances in Prostaglandin, Leukotriene, and other Bioactive Lipid Research


Book Description

This volume, the Proceedings of the 12th International Conference on Advances in Prostaglandin, Leukotriene and Other Bioactive Lipid Research: Basic Science and Clinical Applications, held August 25-29, 2002, in Istanbul, Turkey, discusses advances in bioactive lipid research with special attention to cancer, cardiovascular diseases, gastrointestinal diseases and respiratory diseases. Specific topics covered include the role of leukotrienes and lipoxins in inflammation, the cytochrome P450 pathway, the genetics and genomics of bioactive lipids, lipid peroxidation, apoptosis, angiogenesis, isoprostanes, receptors and inhibitors, cyclooxygenase and lipoxygenase pathways and inhibitors, prostaglandin synthases and receptor signaling, phospholipases and inhibitors.




Encyclopedia of Gastroenterology


Book Description

Encyclopedia of Gastroenterology, Second Edition provides a comprehensive and concise reference on all aspects of gastroenterology and hepatology, including the organs in the gastrointestinal system, their functions in health and disease, and strategies or procedures to resolve or prevent problems and disease. This concise, up-to-date information includes comprehensive sections on the impact of nutrition, gastrointestinal microbiota, lifestyle, commonly used drugs, and surgical procedures on health and disease. Since the first edition, attention to the roles of nutrition and gastrointestinal microorganisms (microbiota, formerly Microbiota) in health and disease has skyrocketed. In addition, an entirely new section on obesity and diabetes is included. Presents comprehensive coverage of every topic within gastroenterology Offers researchers a one-stop, fully-referenced resource to explore questions Includes teaching tools, multimedia and interactive elements Provides readers with multi-layered content and a media-rich learning resource for both instructors and students Covers hot new topics in GI health and disease, including new sections on stem cells, intestinal bacteria, obesity and intestinal microbiota




Heterogeneity of ILC2s


Book Description




Untranslated Gene Regions and Other Non-coding Elements


Book Description

There is now compelling evidence that the complexity of higher organisms correlates with the relative amount of non-coding RNA rather than the number of protein-coding genes. Previously dismissed as “junk DNA”, it is the non-coding regions of the genome that are responsible for regulation, facilitating complex temporal and spatial gene expression through the combinatorial effect of numerous mechanisms and interactions working together to fine-tune gene expression. The major regions involved in regulation of a particular gene are the 5’ and 3’ untranslated regions and introns. In addition, pervasive transcription of complex genomes produces a variety of non-coding transcripts that interact with these regions and contribute to regulation. This book discusses recent insights into the regulatory roles of the untranslated gene regions and non-coding RNAs in the control of complex gene expression, as well as the implications of this in terms of organism complexity and evolution.​










Long Non-Coding RNAs in Cancer


Book Description

This volume presents techniques needed for the study of long non-coding RNAs (lncRNAs) in cancer from their identification to functional characterization. Chapters guide readers through identification of lncRNA expression signatures in cancer tissue or liquid biopsies by RNAseq, single Cell RNAseq, Phospho RNAseq or Nanopore Sequencing techniques; validation of lncRNA signatures by Real time PCR, digital PCR or in situ hybridization; and functional analysis by siRNA or CRISPR based methods for lncRNA silencing or overexpression. Lipid based nanoparticles for delivery of siRNAs in vivo, lncRNA-protein interactions, viral lncRNAs and circRNAs are also treated in this volume. Written in the format of the highly successful Methods in Molecular Biology series, each chapter includes an introduction to the topic, lists necessary materials and reagents, includes tips on troubleshooting and known pitfalls, and step-by-step, readily reproducible protocols. Authoritative and practical, Long Non-Coding RNAs in Cancer aims to provide a collection of laboratory protocols, bioinformatic pipelines, and review chapters to further research in this vital field.