The HIV-1 Envelope Glycoproteins


Book Description

The need for a vaccine against HIV is obvious, but the development of an effective vaccine has met with frustrations. The HIV envelope glycoproteins, residing in the viral membrane, are the sole viral proteins exposed on the outside of virus particles and.







Stable and Homogeneous HIV-1 Envelope Glycoprotein Trimers as Vaccine Candidates and Targets of Inhibitors


Book Description

The target of neutralizing antibodies (Abs) and entry inhibitors against HIV-1 is the envelope glycoprotein (Env) spike, a trimer of non-covalently associated gp120-gp41 heterodimers which mediates entry into target cells. The elicitation of neutralizing Abs against Env has been complicated by its instability and heterogeneity. To dissect Env heterogeneity on HIV-1, we developed a virus capture assay to probe virion-associated Env. We discovered that irrelevant Env varies greatly by genotype and expression vector, that immature gp160 persists at the virion surface, and that exogenous gp41 can bind to virions. We also assessed the functional stability of Env after exposure to heat, denaturants and prolonged incubations. Heat stability of Env trimers varied between HIV-1 isolates within a constrained range and correlated with stability to other conditions. The above studies revealed a complex picture of the antigenic surface of HIV-1. We next engineered Env trimers that were more stable and homogeneous than is typical. In the first approach, directed evolution of HIV-1 was used to select for virions displaying hyperstable Env trimers, and the stable Env was also more homogeneously trimeric than wild-type. These Env trimers will make interesting immunogens that do not require artificial stabilization. Second, chemical crosslinkers were used to covalently lock Env in trimeric conformation(s), after which irrelevant Env was depleted and Env trimers were purified. Immunization involving crosslinked Env trimers on proteoliposomes revealed that although crosslinking diminished the overall immunogenicity of Env, the Abs that were elicited sporadically neutralized different strains of HIV-1. Finally, we determined mechanistic details of a novel HIV-1 entry inhibitor, PF-68742. This compound blocks Env-mediated fusion at a post-attachment step. Env mutagenesis studies point to a gp120-gp41 interface involving gp120 C5, the disulfide loop and fusion peptide (FP) of gp41 as its likely target. PF-68742 and the inhibitor VIRIP both strongly enhanced the infectivity of viruses containing escape mutations in the FP. We hypothesize that these two inhibitors control FP insertion into the membrane by different mechanisms. Our results have illuminated new structure-function relationships in HIV-1 Env, and have produced new leads for the design of vaccine candidates and entry inhibitors against HIV-1.




HIV Glycans in Infection and Immunity


Book Description

Glycosylation is a common and extremely important modification in biological molecules, particularly of proteins. HIV Glycans in Infection and Immunity provides an overview of the roles of glycans in the transmission/infection, antigenicity, and immunogenicity of HIV and the HIV envelope glycoprotein.​ It explores recent advances in the understanding of the impact of HIV glycans in infection and their promise for immunological and therapeutic intervention. Novel collaborations between glycobiologists and immunologists in recent years have led to key advances in the understanding of HIV glycans. These cross-disciplinary endeavors, their achievements and their impact on the field are all addressed, herein.




HIV-1 Immune Escape and Neutralizing Antibodies


Book Description

The HIV-1 envelope glycoproteins gp120 and gp41 mediate binding and fusion of the virus to target cells. The envelope glycoproteins are exposed on the surface of the virus as trimeric spikes and are the major targets for neutralizing antibodies. The design of envelope glycoprotein-based subunit vaccines has been frustrated by many viral immune escape mechanisms. Trimeric envelope glycoprotein formulations hold promise to overcome limitations of monomeric envelope glycoproteins as immunogens. The generation of native, trimeric envelope glycoprotein complexes, however, remains a major challenge. Here, solid-phase proteoliposomes containing native, trimeric HIV-1 envelope glycoprotein complexes that mimic the trimeric complex as it is found on the viral surface have been designed. In a comparative immunogenicity study, these proteoliposomes were shown to better elicit broadly neutralizing antibodies than gp120. A second trimeric envelope glycoprotein formulation, soluble YU2 gp140-GCN4 constructs, were also shown to better elicit broadly neutralizing antibodies in rabbits, extending a previous study in mice. These data support the hypothesis that trimeric envelope glycoprotein formulations are an advance over gp120-based immunogens. To date, only four broadly neutralizing antibodies against the HIV-1 envelope glycoproteins have been identified. Here, three novel Fab antibody fragments binding to the CD4 binding site of gp120 have been identified from phage-displayed antibody libraries with proteoliposomes. These Fab antibodies display some breadth and potency in neutralizing HIV-1. Comparison of the neutralizing activity of Fab antibodies and whole antibodies directed to the CD4 binding site suggests that these Fab antibodies may significantly gain neutralizing potency as whole antibodies. Many HIV-1 immune escape mechanisms complicate the elicitation of broadly neutralizing antibodies. Core gp120 envelope glycoproteins derived from primary isolate viruses were found t.




HIV-1 Vaccine Design Using Trimeric HIV-1 Envelope Glycoprotein


Book Description

HIV-1 uses a trimeric envelope spike to enter human T-cell. Its subunit is a hetero-dimer of gp120 and gp41 ectodomain (gp140). A recombinant trimer vaccine that mimics native spike might elicit entry-blocking antibodies and prevent HIV infection. We report a new approach to produce HIV-1 envelope trimers. The C-terminus of gp140 was attached to Strep-Tag II separated from trimer-base and glycan-shield by a long linker. This allowed the capture of near-homogeneous gp140 directly from culture medium. Cleaved, uncleaved, fully or partially glycosylated trimers from different clade viruses were produced. Cleavage of gp140 was not essential for trimerization, but it triggered a conformational change that channels trimers into correct glycosylation pathways generating compact three-blade propeller-shaped trimers. Uncleaved trimers entered aberrant pathways resulting in hyper-glycosylation and conformational heterogeneity. We also show that soluble cleaved trimers induce neutralizing antibody response against autologous (sequence-matched) tier 2 virus and a more sensitive heterologous tier 1 response in rabbits. These studies established a "universal" system to produce HIV-1 trimers and generated new insights into their maturation that bear on the HIV-1 vaccine design.




Sequences of Proteins of Immunological Interest


Book Description

Tabulation and analysis of amino acid and nucleic acid sequences of precursors, v-regions, c-regions, j-chain, T-cell receptors for antigen, T-cell surface antigens, l-microglobulins, major histocompatibility antigens, thy-1, complement, c-reactive protein, thymopoietin, integrins, post-gamma globulin, -macroglobulins, and other related proteins.




Structure in Protein Chemistry


Book Description

The second edition of Structure in Protein Chemistry showcases the latest developments and innovations in the field of protein structure analysis and prediction. The book begins by explaining how proteins are purified and describes methods for elucidating their sequences of amino acids and defining their posttranslational modifications. Comprehensive explanations of crystallography and of noncovalent forces-ionic interactions, hydrogen bonding, and the hydrophobic effect-act as a prelude to an exhaustive description of the atomic details of the structures of proteins. The resulting understanding of protein molecular structure forms the basis for discussions of the evolution of proteins, the symmetry of the oligomeric associations that produce them, and the chemical, mathematical, and physical basis of the techniques used to study their structures. The latter include image reconstruction, nuclear magnetic resonance spectroscopy, proton exchange, optical spectroscopy, electrophoresis, covalent cross-linking, chemical modification, immunochemistry, hydrodynamics, and the scattering of light, X-radiation, and neutrons. These procedures are applied to study the folding of polypeptides and the assembly of oligomers. Biological membranes and their proteins are also discussed. Structure in Protein Chemistry, Second Edition, bridges the gap between introductory biophysical chemistry courses and research literature. It serves as a comprehensive textbook for advanced undergraduates and graduate students in biochemistry, biophysics, and structural and molecular biology. Professionals engaged in chemical, biochemical, and molecular biological research will find it a useful reference.




Retroviruses 4


Book Description

The technique of microinjection along with viral genetics and molecular biology has proven useful in the correlation of retroviral polynucleotide structure with function. The advantage of this technique is the involvement of living cells where rare activities may be observed and where properties of living cells can be assayed. Future studies involving recombinant DNA molecules and the asso­ ciation of proteins with nucleic acids promise to yield additional insight into the nucleotide sequences involved in the expression of viral activities. References Anderson SM, Chen JH (1981) In vitro translation of avian myeloblastosis virus RNA. J Virol 40: 107-117 Berget SM, Moore C, Sharp PA (1977) Spliced segments of the 5' terminus of adenovirus 2 late mRNA. Proc Nat! Acad Sci USA 74:3171-3175 Bishop JM (1978) Retroviruses. Annu Rev Biochem 47:35-88 Capecchi MR (1980) High efficiency transformation by direct microinjection of DNA into cultured mammalian cells. Cell 22:479-488 Chien, Y-H, Junghans RP, Davidson W (1980) Electron microscopic analysis of the structure of RNA tumor virus nucleic acids. In: Stephenson JR (ed) Molecular biology of RNA tumor viruses.