Zebrafish Deadly Seven: Neurogenesis, Somitogenesis, and Neural Circuit Formation


Book Description

Abstract: The relative simplicity of the early zebrafish nervous system makes it an attractive model for studying vertebrate nervous system development. Mutagenesis screens in zebrafish have been undertaken to identify new genes involved in different aspects of nervous system development. We have characterized an ENU induced mutation in zebrafish deadly seven/notch 1a (des), which perturbs neurogenesis, somitogenesis, and motor axon outgrowth. The neurogenic defect is manifested as an increase in hindbrain interneurons and spinal motoneurons. In addition, we find a decrease in the number of spinal sensory neurons, and an increase in sensory neurons derived from neural crest cells. This data demonstrates that Notch signaling is important for determining the number of specific neuronal cell types during early nervous system development. The somite defect in des mutants is revealed by abnormalities in somite/myotome boundary formation and somite/myotome gene expression in the mid- and posterior trunk and tail. Each somite/myotome in wild-type embryos contains an anterior and posterior domain. This anterior-posterior somite patterning is disrupted in des mutant embryos. Our studies reveal that this patterning defect causes aberrant motor axon outgrowth. Motor axons in wild-types obey domain restrictions, never entering the posterior domain. However, in des mutant embryos, motor axons are seen in both domains. Thus, proper patterning of the somite is essential for stereotyped motor axon pathfinding. The des mutation results in a dramatic increase in the hindbrain interneuron, Mauthner (Mth). This neuron is an integral part of a relatively simple neural circuit driving the escape response in zebrafish and thus presents an excellent opportunity to study properties of neural circuit formation. Due to the presence of supernumerary Mth cells in des mutants; we analyzed the affect of having one cellular component of this circuit dramatically increased on circuit formation and behavior. Our results indicate that all of the supernumerary Mth cells are integrated into the circuit and the circuit is functional. The escape behavior of des mutants is very similar to wild-type embryos. We found, however, that individual Mth cells in des mutants contacted fewer target cells in the spinal cord than Mth cell in wild-type larvae. These data indicate that when there are more Mth cells present, they divide up the territory thus incorporating all cells into the circuit yet maintaining a normal escape response behavior. This study demonstrates that there is plasticity in the formation of the escape response circuit in zebrafish.







Essential Zebrafish Methods: Genetics and Genomics


Book Description

Due to its prolific reproduction and the external development of the transparent embryo, the zebrafish is the prime model for genetic and developmental studies, as well as research in genomics. While genetically distant from humans, nonetheless the vertebrate zebrafish has comparable organs and tissues that make it the model organism for study of vertebrate development.This book, one of two new volumes in the Reliable Lab Solutions series dealing with zebrafish, brings together a robust and up-to-date collection of time-tested methods presented by the world's leading scientists. Culled from previously published chapters in Methods in Cell Biology and updated by the original authors where relevant, it provides a comprehensive collection of protocols describing the most widely used techniques relevant to the study of zebrafish genetics and genomics. The methods in this volume were hand-selected by the editors, whose goal was to a provide a handy and cost-effective collection of fail-safe methods, tips, and "tricks of the trade" to both experienced researchers and more junior members in the lab. - Provides busy researchers a quick reference for time-tested methods and protocols that really work, updated where possible by the original authors - Gives pragmatic wisdom to the non-specialist from experts in the field with years of experience with trial and error




Atlas of Early Zebrafish Brain Development


Book Description

Atlas of Early Zebrafish Brain Development: A Tool for Molecular Neurogenetics, Second Edition, remains the only neuroanatomical expression atlas of important genetic and immunohistochemical markers of this vertebrate model system. It represents a key reference and interpretation matrix for analyzing expression domains of genes involved in Zebrafish brain development and neurogenesis, and serves as a continuing milestone in this research area. This updated volume provides in-situ hybridized and immunostained preparations of complete series of brain sections, revealing markers of the fundamental stages in the life history of neuronal cells in very high quality preparations and photographic plates. Specific additions to this edition include documentation on the distribution of neurons expressing GABA, dopamine and serotonin, material on the basal ganglia, hypothalamus, and the caudal, segmented part of the diencephalon, new theories on the early organization of the telencephalon and thalamus, and integration of a comparative perspective on the mid- and hindbrain. - Documentation on the distribution of neurons expressing GABA, dopamine and serotonin - Material on the basal ganglia, hypothalamus, and the caudal, segmented part of the diencephalon - New theories about the early organization of the telencephalon and thalamus - Integration of a comparative perspective on the mid- and hindbrain




Scientific Frontiers in Developmental Toxicology and Risk Assessment


Book Description

Scientific Frontiers in Developmental Toxicology and Risk Assessment reviews advances made during the last 10-15 years in fields such as developmental biology, molecular biology, and genetics. It describes a novel approach for how these advances might be used in combination with existing methodologies to further the understanding of mechanisms of developmental toxicity, to improve the assessment of chemicals for their ability to cause developmental toxicity, and to improve risk assessment for developmental defects. For example, based on the recent advances, even the smallest, simplest laboratory animals such as the fruit fly, roundworm, and zebrafish might be able to serve as developmental toxicological models for human biological systems. Use of such organisms might allow for rapid and inexpensive testing of large numbers of chemicals for their potential to cause developmental toxicity; presently, there are little or no developmental toxicity data available for the majority of natural and manufactured chemicals in use. This new approach to developmental toxicology and risk assessment will require simultaneous research on several fronts by experts from multiple scientific disciplines, including developmental toxicologists, developmental biologists, geneticists, epidemiologists, and biostatisticians.




Pluripotent Stem Cells


Book Description

Pluripotent stem cells have distinct characteristics: self-renewal and the potential to differentiate into various somatic cells. In recent years, substantial advances have been made from basic science to clinical applications. The vast amount knowledge available makes obtaining concise yet sufficient information difficult, hence the purpose of this book. In this book, embryonic stem cells, induced pluripotent stem cells, and mesenchymal stem cells are discussed. The book is divided into five sections: pluripotency, culture methods, toxicology, disease models, and regenerative medicine. The topics covered range from new concepts to current technologies. Readers are expected to gain useful information from expert contributors.




Molecular Mechanisms of Notch Signaling


Book Description

This book describes the Notch signaling pathway with a focus on molecular mechanisms. The Notch signaling pathway is a seemingly simple pathway that does not involve any second messenger. Upon ligand binding two consecutive proteolytic cleavages of the NOTCH receptor release the Notch intracellular domain from the membrane. The Notch intracellular domain migrates into the nucleus and activates gene expression. Recently, new technologies allowed us to better understand this pivotal signaling cascade and revealed new regulatory mechanisms. The different chapters cover many aspects of the Notch signaling focusing on the mechanisms governing the receptor/ligand interaction as well as on the downstream intracellular signaling events. Aspects of both canonical and non-canonical signaling are discussed and the function of Notch signaling in physiological and pathological contexts are elucidated. This book is not only intended for experts but it should also be a useful resource for young, sprouting scientists or interested scientists from other research areas, who may use this book as a stimulating starting point for further discoveries and developments.




Receptor Tyrosine Kinases: Family and Subfamilies


Book Description

This book devotes a chapter to each RTK family and the multiple receptors within each family, thoroughly covering all of the RTKs. The chapters all follow the same structure, presenting this essential information in an accessible and user-friendly format. Each chapter covers one specific family of receptors and begins with a general introduction to that family and a comprehensive discussion of that receptor’s family in development and human disease. Following are in-depth analyses of each family’s receptors with discussions on the gene, protein, ligands, activation, and signaling pathways along with discussion of receptor processing and signal attenuation. Further, cross talk with other receptors systems, post-translational modification and specific unique characteristics to each RTK are discussed. Because it isolates and explains each family, this book is an essential companion volume to Receptor Tyrosine Kinases: Structure, Functions and Role in Human Disease, by the same authors, which talks about RTKs more generally and without the family-by-family detail.




Development of the Autonomic Nervous System


Book Description

The Novartis Foundation Series is a popular collection of the proceedings from Novartis Foundation Symposia, in which groups of leading scientists from a range of topics across biology, chemistry and medicine assembled to present papers and discuss results. The Novartis Foundation, originally known as the Ciba Foundation, is well known to scientists and clinicians around the world.




Kidney Development and Disease


Book Description

Kidney Development and Disease brings together established and young investigators who are leading authorities in nephrology to describe recent advances in three primary areas of research. The first section describes the use of animal models as powerful tools for the discovery of numerous molecular mechanisms regulating kidney development. The second section focuses on nephric cell renewal and differentiation, which lead to diverse cell fates within the developing kidney, and discusses diseases resulting from the aberrant regulation of the balance between cell fate decisions. The final section concentrates on morphogenesis of the developing kidney and its maintenance after formation as well as the diseases resulting from failures in these processes. Kidney form and function have been extensively studied for centuries, leading to discoveries related to their development and disease. Recent scientific advances in molecular and imaging techniques have broadened our understanding of nephron development and maintenance as well as the diseases related to these processes.