Advances in Applied and Computational Topology


Book Description

What is the shape of data? How do we describe flows? Can we count by integrating? How do we plan with uncertainty? What is the most compact representation? These questions, while unrelated, become similar when recast into a computational setting. Our input is a set of finite, discrete, noisy samples that describes an abstract space. Our goal is to compute qualitative features of the unknown space. It turns out that topology is sufficiently tolerant to provide us with robust tools. This volume is based on lectures delivered at the 2011 AMS Short Course on Computational Topology, held January 4-5, 2011 in New Orleans, Louisiana. The aim of the volume is to provide a broad introduction to recent techniques from applied and computational topology. Afra Zomorodian focuses on topological data analysis via efficient construction of combinatorial structures and recent theories of persistence. Marian Mrozek analyzes asymptotic behavior of dynamical systems via efficient computation of cubical homology. Justin Curry, Robert Ghrist, and Michael Robinson present Euler Calculus, an integral calculus based on the Euler characteristic, and apply it to sensor and network data aggregation. Michael Erdmann explores the relationship of topology, planning, and probability with the strategy complex. Jeff Erickson surveys algorithms and hardness results for topological optimization problems.




Computational Topology


Book Description

Combining concepts from topology and algorithms, this book delivers what its title promises: an introduction to the field of computational topology. Starting with motivating problems in both mathematics and computer science and building up from classic topics in geometric and algebraic topology, the third part of the text advances to persistent homology. This point of view is critically important in turning a mostly theoretical field of mathematics into one that is relevant to a multitude of disciplines in the sciences and engineering. The main approach is the discovery of topology through algorithms. The book is ideal for teaching a graduate or advanced undergraduate course in computational topology, as it develops all the background of both the mathematical and algorithmic aspects of the subject from first principles. Thus the text could serve equally well in a course taught in a mathematics department or computer science department.




Computational Topology for Data Analysis


Book Description

Topological data analysis (TDA) has emerged recently as a viable tool for analyzing complex data, and the area has grown substantially both in its methodologies and applicability. Providing a computational and algorithmic foundation for techniques in TDA, this comprehensive, self-contained text introduces students and researchers in mathematics and computer science to the current state of the field. The book features a description of mathematical objects and constructs behind recent advances, the algorithms involved, computational considerations, as well as examples of topological structures or ideas that can be used in applications. It provides a thorough treatment of persistent homology together with various extensions – like zigzag persistence and multiparameter persistence – and their applications to different types of data, like point clouds, triangulations, or graph data. Other important topics covered include discrete Morse theory, the Mapper structure, optimal generating cycles, as well as recent advances in embedding TDA within machine learning frameworks.







Computational Homology


Book Description

Homology is a powerful tool used by mathematicians to study the properties of spaces and maps that are insensitive to small perturbations. This book uses a computer to develop a combinatorial computational approach to the subject. The core of the book deals with homology theory and its computation. Following this is a section containing extensions to further developments in algebraic topology, applications to computational dynamics, and applications to image processing. Included are exercises and software that can be used to compute homology groups and maps. The book will appeal to researchers and graduate students in mathematics, computer science, engineering, and nonlinear dynamics.




Topology for Computing


Book Description

The emerging field of computational topology utilizes theory from topology and the power of computing to solve problems in diverse fields. Recent applications include computer graphics, computer-aided design (CAD), and structural biology, all of which involve understanding the intrinsic shape of some real or abstract space. A primary goal of this book is to present basic concepts from topology and Morse theory to enable a non-specialist to grasp and participate in current research in computational topology. The author gives a self-contained presentation of the mathematical concepts from a computer scientist's point of view, combining point set topology, algebraic topology, group theory, differential manifolds, and Morse theory. He also presents some recent advances in the area, including topological persistence and hierarchical Morse complexes. Throughout, the focus is on computational challenges and on presenting algorithms and data structures when appropriate.




Computational Topology for Biomedical Image and Data Analysis


Book Description

This book provides an accessible yet rigorous introduction to topology and homology focused on the simplicial space. It presents a compact pipeline from the foundations of topology to biomedical applications. It will be of interest to medical physicists, computer scientists, and engineers, as well as undergraduate and graduate students interested in this topic. Features: Presents a practical guide to algebraic topology as well as persistence homology Contains application examples in the field of biomedicine, including the analysis of histological images and point cloud data




Computational Geometry, Topology and Physics of Digital Images with Applications


Book Description

This book discusses the computational geometry, topology and physics of digital images and video frame sequences. This trio of computational approaches encompasses the study of shape complexes, optical vortex nerves and proximities embedded in triangulated video frames and single images, while computational geometry focuses on the geometric structures that infuse triangulated visual scenes. The book first addresses the topology of cellular complexes to provide a basis for an introductory study of the computational topology of visual scenes, exploring the fabric, shapes and structures typically found in visual scenes. The book then examines the inherent geometry and topology of visual scenes, and the fine structure of light and light caustics of visual scenes, which bring into play catastrophe theory and the appearance of light caustic folds and cusps. Following on from this, the book introduces optical vortex nerves in triangulated digital images. In this context, computational physics is synonymous with the study of the fine structure of light choreographed in video frames. This choreography appears as a sequence of snapshots of light reflected and refracted from surface shapes, providing a solid foundation for detecting, analyzing and classifying visual scene shapes.




Big Data Optimization: Recent Developments and Challenges


Book Description

The main objective of this book is to provide the necessary background to work with big data by introducing some novel optimization algorithms and codes capable of working in the big data setting as well as introducing some applications in big data optimization for both academics and practitioners interested, and to benefit society, industry, academia, and government. Presenting applications in a variety of industries, this book will be useful for the researchers aiming to analyses large scale data. Several optimization algorithms for big data including convergent parallel algorithms, limited memory bundle algorithm, diagonal bundle method, convergent parallel algorithms, network analytics, and many more have been explored in this book.




Topology and Its Applications


Book Description

Discover a unique and modern treatment of topology employing a cross-disciplinary approach Implemented recently to understand diverse topics, such as cell biology, superconductors, and robot motion, topology has been transformed from a theoretical field that highlights mathematical theory to a subject that plays a growing role in nearly all fields of scientific investigation. Moving from the concrete to the abstract, Topology and Its Applications displays both the beauty and utility of topology, first presenting the essentials of topology followed by its emerging role within the new frontiers in research. Filling a gap between the teaching of topology and its modern uses in real-world phenomena, Topology and Its Applications is organized around the mathematical theory of topology, a framework of rigorous theorems, and clear, elegant proofs. This book is the first of its kind to present applications in computer graphics, economics, dynamical systems, condensed matter physics, biology, robotics, chemistry, cosmology, material science, computational topology, and population modeling, as well as other areas of science and engineering. Many of these applications are presented in optional sections, allowing an instructor to customize the presentation. The author presents a diversity of topological areas, including point-set topology, geometric topology, differential topology, and algebraic/combinatorial topology. Topics within these areas include: Open sets Compactness Homotopy Surface classification Index theory on surfaces Manifolds and complexes Topological groups The fundamental group and homology Special "core intuition" segments throughout the book briefly explain the basic intuition essential to understanding several topics. A generous number of figures and examples, many of which come from applications such as liquid crystals, space probe data, and computer graphics, are all available from the publisher's Web site.