Average Case Analysis of Algorithms on Sequences


Book Description

A timely book on a topic that has witnessed a surge of interest over the last decade, owing in part to several novel applications, most notably in data compression and computational molecular biology. It describes methods employed in average case analysis of algorithms, combining both analytical and probabilistic tools in a single volume. * Tools are illustrated through problems on words with applications to molecular biology, data compression, security, and pattern matching. * Includes chapters on algorithms and data structures on words, probabilistic and analytical models, inclusion-exclusion principles, first and second moment methods, subadditive ergodic theorem and large deviations, elements of information theory, generating functions, complex asymptotic methods, Mellin transform and its applications, and analytic poissonization and depoissonization. * Written by an established researcher with a strong international reputation in the field.




Beyond the Worst-Case Analysis of Algorithms


Book Description

Introduces exciting new methods for assessing algorithms for problems ranging from clustering to linear programming to neural networks.




Analysis of Algorithms


Book Description

Data Structures & Theory of Computation




An Introduction to the Analysis of Algorithms


Book Description

Despite growing interest, basic information on methods and models for mathematically analyzing algorithms has rarely been directly accessible to practitioners, researchers, or students. An Introduction to the Analysis of Algorithms, Second Edition, organizes and presents that knowledge, fully introducing primary techniques and results in the field. Robert Sedgewick and the late Philippe Flajolet have drawn from both classical mathematics and computer science, integrating discrete mathematics, elementary real analysis, combinatorics, algorithms, and data structures. They emphasize the mathematics needed to support scientific studies that can serve as the basis for predicting algorithm performance and for comparing different algorithms on the basis of performance. Techniques covered in the first half of the book include recurrences, generating functions, asymptotics, and analytic combinatorics. Structures studied in the second half of the book include permutations, trees, strings, tries, and mappings. Numerous examples are included throughout to illustrate applications to the analysis of algorithms that are playing a critical role in the evolution of our modern computational infrastructure. Improvements and additions in this new edition include Upgraded figures and code An all-new chapter introducing analytic combinatorics Simplified derivations via analytic combinatorics throughout The book’s thorough, self-contained coverage will help readers appreciate the field’s challenges, prepare them for advanced results—covered in their monograph Analytic Combinatorics and in Donald Knuth’s The Art of Computer Programming books—and provide the background they need to keep abreast of new research. "[Sedgewick and Flajolet] are not only worldwide leaders of the field, they also are masters of exposition. I am sure that every serious computer scientist will find this book rewarding in many ways." —From the Foreword by Donald E. Knuth




Repetitive Structures in Biological Sequences: Algorithms and Applications


Book Description

Repetitive structures in biological sequences are emerging as an active focus of research and the unifying concept of "repeatome" (the ensemble of knowledge associated with repeating structures in genomic/proteomic sequences) has been recently proposed in order to highlight several converging trends. One main trend is the ongoing discovery that genomic repetitions are linked to many biological significant events and functions. Diseases (e.g. Huntington's disease) have been causally linked with abnormal expansion of certain repeating sequences in the human genome. Deletions or multiple copy duplications of genes (Copy Number Variations) are important in the aetiology of cancer, Alzheimer, and Parkinson diseases. A second converging trend has been the emergence of many different models and algorithms for detecting non-obvious repeating patterns in strings with applications to in genomic data. Borrowing methodologies from combinatorial pattern, matching, string algorithms, data structures, data mining and machine learning these new approaches break the limitations of the current approaches and offer a new way to design better trans-disciplinary research. The articles collected in this book provides a glance into the rich emerging area of repeatome research, addressing some of its pressing challenges. We believe that these contributions are valuable resources for repeatome research and will stimulate further research from bioinformatic, statistical, and biological points of view.







Fundamentals of the Average Case Analysis of Particular Algorithms


Book Description

A careful and cogent analysis of the average-case behavior of a variety of algorithms accompanied by mathematical calculations. The analysis consists of determining the behavior of an algorithm in the best, worst, and average case. Material is outlined in various exercises and problems.




Approximation, Randomization and Combinatorial Optimization. Algorithms and Techniques


Book Description

This book constitutes the joint refereed proceedings of the 11th International Workshop on Approximation Algorithms for Combinatorial Optimization Problems, APPROX 2008 and the 12th International Workshop on Randomization and Computation, RANDOM 2008, held in Boston, MA, USA, in August 2008. The 20 revised full papers of the APPROX 2008 workshop were carefully reviewed and selected from 42 submissions and focus on algorithmic and complexity issues surrounding the development of efficient approximate solutions to computationally difficult problems. RANDOM 2008 is concerned with applications of randomness to computational and combinatorial problems and accounts for 27 revised full papers, also diligently reviewed and selected out of 52 workshop submissions.




Algorithms and Theory of Computation Handbook


Book Description

Algorithms and Theory of Computation Handbook is a comprehensive collection of algorithms and data structures that also covers many theoretical issues. It offers a balanced perspective that reflects the needs of practitioners, including emphasis on applications within discussions on theoretical issues. Chapters include information on finite precision issues as well as discussion of specific algorithms where algorithmic techniques are of special importance, including graph drawing, robotics, forming a VLSI chip, vision and image processing, data compression, and cryptography. The book also presents some advanced topics in combinatorial optimization and parallel/distributed computing. • applications areas where algorithms and data structuring techniques are of special importance • graph drawing • robot algorithms • VLSI layout • vision and image processing algorithms • scheduling • electronic cash • data compression • dynamic graph algorithms • on-line algorithms • multidimensional data structures • cryptography • advanced topics in combinatorial optimization and parallel/distributed computing




Data Structures and Algorithm Analysis in Java, Third Edition


Book Description

Comprehensive treatment focuses on creation of efficient data structures and algorithms and selection or design of data structure best suited to specific problems. This edition uses Java as the programming language.