Avian Genomics in Ecology and Evolution


Book Description

Birds catch the public imagination like no other group of animals; in addition, birders are perhaps the largest non-professional naturalist community. Genomics and associated bioinformatics have revolutionised daily life in just a few decades. At the same time, this development has facilitated the application of genomics technology to ecological and evolutionary studies, including biodiversity and conservation at all levels. This book reveals how the exciting toolbox of genomics offers new opportunities in all areas of avian biology. It presents contributions from prominent experts at the intersection of avian biology and genomics, and offers an ideal introduction to the world of genomics for students, biologists and bird enthusiasts alike. The book begins with a historical perspective on how genomic technology was adopted by bird ecology and evolution research groups. This led, as the book explains, to a revised understanding of avian evolution, with exciting consequences for biodiversity research as a whole. Lastly, these impacts are illustrated using seminal examples and the latest discoveries from avian biology laboratories around the world.




Chromosome Painting


Book Description

Chromosome Painting is the most modern and novel technique for directly identifying several gene sequences simultaneously in the chromosome, with the aid of specific probes in molecular hybridization. Its resolution ranges from single copy to entire genome sequences. It is now applied in plant, animal, and human systems, in gene mapping, identification of genetic disorders, evolutionary studies, and gene transfer experiments. This treatise is the first of its kind to cover the technique with all its modifications and applications. It is designed for regular use by postgraduate students and research workers in cell and molecular genetics, plant and animal sciences, agriculture, medicine, and phylogenetic studies.




Avian Genome Evolution


Book Description




RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods


Book Description

The existence of genes for RNA molecules not coding for proteins (ncRNAs) has been recognized since the 1950's, but until recently, aside from the critically important ribosomal and transfer RNA genes, most focus has been on protein coding genes. However, a long series of striking discoveries, from RNA's ability to carry out catalytic function, to discovery of riboswitches, microRNAs and other ribo-regulators performing critical tasks in essentially all living organisms, has created a burgeoning interest in this primordial component of the biosphere. However, the structural characteristics and evolutionary constraints on RNA molecules are very different from those of proteins, necessitating development of a completely new suite of informatic tools to address these challenges. In RNA Sequence, Structure, Function: Computational and Bioinformatic Methods, expert researchers in the field describe a substantial and relevant fraction of these methodologies from both practical and computational/algorithmic perspectives. Focusing on both of these directions addresses both the biologist interested in knowing more about RNA bioinformatics as well as the bioinformaticist interested in more detailed aspects of the algorithms. Written in the highly successful Methods in Molecular Biology series format, the chapters include the kind of detailed description and implementation advice that is crucial for getting optimal results. Thorough and intuitive, RNA Sequence, Structure, Function: Computational and Bioinformatic Methods aids scientists in continuing to study key methods and principles of RNA bioinformatics.




Living Dinosaurs


Book Description

Living Dinosaurs offers a snapshot of our current understanding of the origin and evolution of birds. After slumbering for more than a century, avian palaeontology has been awakened by startling new discoveries on almost every continent. Controversies about whether dinosaurs had real feathers or whether birds were related to dinosaurs have been swept away and replaced by new and more difficult questions: How old is the avian lineage? How did birds learn to fly? Which birds survived the great extinction that ended the Mesozoic Era and how did the avian genome evolve? Answers to these questions may help us understand how the different kinds of living birds are related to one another and how they evolved into their current niches. More importantly, they may help us understand what we need to do to help them survive the dramatic impacts of human activity on the planet.




Avian Genomics in Evolution, Agriculture and Health


Book Description

This special issue highlights current research in avian genomics. Most contributions relate to the chicken as the model bird species, but advances in the genomics of turkey, duck and other birds are also presented. With a mixture of review articles and original research papers, this publication illustrates how advances in avian genomics have impacted on a wide range of disciplines such as cytogenetics, genetics, immunology, evolution and development. The many resources that are now available to researchers are also described. The knowledge gained from the avian genomes is not just applicable to bird species but offers a useful comparative tool that helps further research across many species. The study of the avian genomes is also shown to play an important role in the fields of agriculture and human health, e.g. in respect to avian influenza. Well edited and up-to-date, this issue is recommended reading to scientists working in any of the above-mentioned fields of avian research.




The Largest Avian Radiation


Book Description

Based on the latest phylogenetic studies, this book reveals the remarkable new history of how passerines diversified and dispersed across the entire world.




Avian Genetics


Book Description

Avian Genetics: A Population and Ecological Approach is a collection of papers that deals with the study of birds in relation to the synthetic theory of evolution. This book studies the ecology, demography, behavior, and geographical distribution of birds; the text also discusses quantitative, chromosomal, biochemical, and population genetics. Part I reviews the various genetic interactions, including an analysis of DNA sequence variation. The different and newer techniques are compared such as the works of Sibley, Quinn, and White. Part II describes the molding genetic variation and covers topics such as inbreeding; gene flow and the genetic structure of populations; non-random mating; and the process of selection in natural populations of birds. Part III covers actual genetic case histories, including quantitative ecological genetics of great tits; genetic evolution of house sparrows; and presentation of evidence for sexual selection by female choice in the Arctic Skua. This book also presents future research in subjects such as the neutrality-selection controversy or genetics and conservation. This text can be beneficial for ecologists, ornithologists, animal conservationists, and population biologists studying birds.




Bird Species


Book Description

The average person can name more bird species than they think, but do we really know what a bird “species” is? This open access book takes up several fascinating aspects of bird life to elucidate this basic concept in biology. From genetic and physiological basics to the phenomena of bird song and bird migration, it analyzes various interactions of birds – with their environment and other birds. Lastly, it shows imminent threats to birds in the Anthropocene, the era of global human impact. Although it seemed to be easy to define bird species, the advent of modern methods has challenged species definition and led to a multidisciplinary approach to classifying birds. One outstanding new toolbox comes with the more and more reasonably priced acquisition of whole-genome sequences that allow causative analyses of how bird species diversify. Speciation has reached a final stage when daughter species are reproductively isolated, but this stage is not easily detectable from the phenotype we observe. Culturally transmitted traits such as bird song seem to speed up speciation processes, while another behavioral trait, migration, helps birds to find food resources, and also coincides with higher chances of reaching new, inhabitable areas. In general, distribution is a major key to understanding speciation in birds. Examples of ecological speciation can be found in birds, and the constant interaction of birds with their biotic environment also contributes to evolutionary changes. In the Anthropocene, birds are confronted with rapid changes that are highly threatening for some species. Climate change forces birds to move their ranges, but may also disrupt well-established interactions between climate, vegetation, and food sources. This book brings together various disciplines involved in observing bird species come into existence, modify, and vanish. It is a rich resource for bird enthusiasts who want to understand various processes at the cutting edge of current research in more detail. At the same time it offers students the opportunity to see primarily unconnected, but booming big-data approaches such as genomics and biogeography meet in a topic of broad interest. Lastly, the book enables conservationists to better understand the uncertainties surrounding “species” as entities of protection.




Avian Molecular Evolution and Systematics


Book Description

The use of DNA and other biological macromolecules has revolutionized systematic studies of evolutionary history. Methods that use sequences of nucleotides and amino acids are now routinely used as data for addressing evolutionary questions that, although not new questions, have defied description and analysis. The world-renowned contributors use these new methods to unravel particular aspects of the evolutionary history of birds. Avian Molecular Evolution and Systematics presents an overview of the theory and application of molecular systematics, focusing on the phylogeny and evolutionary biology of birds. New, developing areas in the phylogeny of birds at multiple taxonomic areas are covered, as well as methods of analysis for molecular data, evolutionary genetics within and between bird populations, and the application of molecular-based phylogenies to broader questions of evolution. Contains authoritative contributions from leading researchers Discusses the utility of different molecular markers for questions of avian evolution, involving populations and higher-level taxa Applies molecular-based phylogenies of birds and molecular population genetics data to broad questions of organismal and molecular evolution. Compares and contrasts molecular and morphological data sets