Trafficking Inside Cells


Book Description

This book covers the past, present and future of the intra-cellular trafficking field, which has made a quantum leap in the last few decades. It details how the field has developed and evolved as well as examines future directions.







Green Fluorescent Protein


Book Description

Since the discovery of the gene for green fluorescent protein (GFP), derived from jellyfish, this protein that emits a green glow has initiated a revolution in molecular biosciences. With this tool, it is now possible to visualize nearly any protein of interest in any cell or tissue of any species. Since the publication of the first edition, there have been tremendously significant technological advances, including development of new mutant variants. Proteins are now available in yellow and blue, and Novel Fluorescent Proteins (NFPs) have expanded their utility in developing biosensors, biological markers, and other biological applications. This updated, expanded new edition places emphasis on the rise of NFPs, including new chapters on NFP properties with detailed protocols, applications of GFPs and NFPs in industry research, and biosensors. This book provides a solid theoretical framework, along with detailed, practical guidance on use of GFPs and NFPs with discussion of potential pitfalls. The expert contributors provide real examples in showing how to tailor GFP/NFP to specific systems, maximize expression, and enhance detection.




Mobility and Proximity in Biological Membranes


Book Description

Cell surface membranes have long been characterized as two-dimensional fluids whose mobile components are randomized by diffusion in the plane of the membrane bilayer. Recent research has indicated that cell surface membranes are highly organized and ordered and that important functional units of membranes appear as arrays of interacting molecules rather than as single, freely diffusing molecules. Mobility and Proximity in Biological Membranes provides an overview of the results obtained from biophysical methods for probing the organization of cell surface membranes. These results are presented in the context of detailed treatments of the theory and the technical demands of each of the methods. The book describes a versatile and easily applied mode for investigating molecular proximities in plasma membranes in a flow cytometer. Its analysis of lipid fluidity and viscosity of membranes and the rotational mobility of proteins offers intimate insight into the physical chemistry of biological membranes. The electrophysiology of lymphocytes is presented with focus on its importance in different diseases. New techniques are described, and new data, new possibilities, and future trends are presented by world experts. This book's chapters can serve both as guides to the existing literature and as starting points for new experiments and approaches associated with problems in membrane function.




Roles of Phosphatidylinositol 4-phosphate in Secretory Granule Biogenesis


Book Description

Professional secretory cells are responsible for regulated secretion of biologically active molecules to maintain homeostasis. These molecules, which include neuropeptides, digestive enzymes, and hormones, are stored in long-lasting secretory granules (SGs) that undergo exocytosis in response to external stimuli. The molecular mechanisms of SG biogenesis are poorly understood. Using Drosophila larval salivary glands as a model system, our laboratory has previously discovered that the type II phosphatidylinositol 4 kinase (PI4KII) is required for normal SG biogenesis. PI4KII is responsible for the generation of phosphatidylinositol 4-phosphate (PI4P) from phosphatidylinositol (PI) at the trans-Golgi network (TGN) and endosomes. To examine how PI4KII and its product PI4P regulate SG biogenesis, I employed genetic approaches and cell biology techniques to identify and characterize potential factors acting in this pathway. I discovered that Past1, syntaxin-16 (Syx16) and oxysterol binding protein (Osbp) are regulators of PI4KII and PI4KII-mediated SG maturation. I conducted a candidate RNA interference (RNAi) screen that identified many endocytic genes needed for proper SG maturation, suggesting that SG maturation requires endocytic contribution. A secondary screen suggested that Past1 and Syx16 are potential factors acting in the same pathway as PI4KII to facilitate SG maturation. Further characterization demonstrated that both PI4KII-dependent early endosomal sorting and accumulation of PI4P on SG membranes are associated with proper SG maturation. In addition, Past1 and Syx16 are needed for formation of PI4KII-positive endosomal tubules involved in this process. I also examined Osbp, which is a PI4P effector that regulates non-vesicular transport of PI4P and cholesterol across membrane contact sites (MCS). Loss of Osbp resulted in lowered levels of PI4P on SG membranes and an absence of PI4KII-positive tubules, similar to Past1 null mutants. Moreover, a cholesterol probe, D4H, showed that these tubules are enriched in cholesterol. My results indicate that Osbp is required for cholesterol accumulation at endosomal membranes to enable formation of PIKII-positive and cholesterol-rich membrane tubules. Overall, my results establish Past1, Syx16 and Osbp as regulators of PI4KII and describe a novel PI4KII-mediated early endosome retrograde trafficking pathway important for cellular PI4P distribution and SG maturation.




Drosophila melanogaster: Practical Uses in Cell and Molecular Biology


Book Description

Drosophila melanogaster: Practical Uses in Cell and Molecular Biology is a compendium of mostly short technical chapters designed to provide state-of-the art methods to the broad community of cell biologists, and to put molecular and cell biological studies of flies into perspective. The book makes the baroque aspects of genetic nomenclature and procedure accessible to cell biologists. It also contains a wealth of technical information for beginning or advanced Drosophila workers. Chapters, written within a year of publication, make this topical volume a valuable laboratory guide today and an excellent general reference for the future. Key Features* Collection of ready-to-use, state-of-the art methods for modern cell biological and related research using Drosophila melanogaster* Accessible to both experienced Drosophila researchers and to others who wish to join in at the cutting edge of this system * Drosophila offers an easily managed life cycle, inexpensive lifestyle, extraordinarily manipulable molecular and classical genetics, now combined with powerful new cell biology techniques * Introduction and overview sections orient the user to the Drosophila literature and lore * Six full-color plates and over 100 figures and tables enhance the understanding of these cell biology techniques




Exocytosis and Endocytosis


Book Description

This volume provides basic and cutting-edge methods and protocols to study the major characteristics of eukaryotic cells. Chapters detail the different pathways of endocytosis in vivo, real time imaging of endocytic steps, endocytosis in model organisms, super-resolution methods to follow proteins involved in exocytosis, specific protocols for exocytosis in specialized cells such as neutrophils or neuroendocrine cells, as well as secretion of exosomes. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and clearly written, Exocytosis and Endocytosis: Methods and Protocols is a valuable resource for researchers in the fields of cell biology, neurology, immunology, oncology, and those interested in studying protein trafficking and signal regulation.




The Golgi Apparatus


Book Description

This book summarizes all new data obtained after development of methods of Golgi complex sub fractionation, molecular biology and microscopy. It collects the full range of expertise, different points of view and different approaches. The book is devoted to molecular modes of the function of the Golgi apparatus as a whole, taking into account all experimental data. The book aims to make the functional organization of the Golgi apparatus more understandable.




Reviews on Biomarker Studies of Metabolic and Metabolism-Related Disorders


Book Description

The book recognizes that throughout the scientific, medical, and economic communities, new tests incorporating biomarkers are needed to improve the diagnosis of patients suffering from metabolic disorders. The early identification of those at risk of developing obesity will help to place these individuals on the best treatment course as early as possible for improved treatment outcomes. This will also help to cut costs incurred by the healthcare services. For all of this to occur, new research efforts are needed to identify novel biomarkers that can be used to predict the disease in the presymptomatic stage, for disease monitoring and for prediction of treatment response. It is also possible that new drug targets can be identified using these approaches which, in turn, can lead to the development of new treatment approaches. This volume also includes a series of reviews on biomarker discovery and usage in the study of diseases marked by perturbations in metabolism. It will describe the pros and cons of the various approaches and cover the successes and failures in this important research field.