Biogeochemistry of the Ross Sea


Book Description

Published by the American Geophysical Union as part of the Antarctic Research Series, Volume 78. The seas surrounding Antarctica are the least-studied on Earth, yet they figure prominently in both the global climate system and the biogeochemical cycling of such key elements as C, N, Si, and P. The Southern Ocean affects climate directly through the sinking of surface waters via cooling and changes in salt content. Such water near Antarctica moves slowly northward through all major ocean basins. In doing so, it retains a long-lived signature of the physical and biological processes that occurred in Antarctic surface waters lasting many hundreds of years through all phases: sinking, northward flow, and mixing or upwelling into the sunlit ocean thousands of kilometers away. By this process, CO2 that dissolves into the Antarctic seas may be stored in the deep ocean for centuries. In fact, the Southern Ocean is one of the most important regions on Earth for the uptake and subsurface transport of fossil fuel CO2.







Upper Ocean Physical and Ecological Dynamics in the Ross Sea, Antarctica


Book Description

This dissertation examines several aspects of the unique physical-biological system that controls biogeochemical cycling in the Ross Sea, the largest continental shelf sea along the Antarctic margin and the most biologically productive region in the Southern Ocean. The core component of the research involves interpretation of data from two oceanographic cruises to the region, one during Summer of 2005--2006 and another in Spring of 2006--2007. Four key research questions are addressed. (1) What physical mechanisms force spatial and temporal variability in mixing depths? (2) How does the dynamic physical environment characteristic of Antarctic continental shelf seas structure distributions of biomass and chemical tracers of production? (3) What key physical and physiological mechanisms control the 13C/12C ratio of organic and inorganic carbon in waters on the Ross Sea continental shelf? and (4) How do physiological variables interact with environmental variability to control phytoplankton taxonomic zonation? Chapter 1 presents an introduction to ocean carbon biogeochemistry and the oceanography of the Southern Ocean and the Ross Sea. Chapter 2 examines the mechanisms effecting early season stratification in the Ross Sea. Lateral advection in the region of upper ocean fronts is shown to be an important mechanism setting early season stratification. Chapter 3 examines several tracer-based methods for estimating upper ocean net community production in the Ross Sea, with explicit recognition of the complexities associated with control volume assumptions and high rates of temporal change. Chapter 4 considers the environmental controls on the distribution of 13C/12C ratios in the Ross Sea. It is shown quantitatively that the two dominant phytoplankton taxa in the Ross Sea have different intrinsic fractionation factors, likely as a result of differing carbon-acquisition physiologies. Air-sea exchange is shown to occur with very noisy fractionation. Finally, Chapter 5 examines the interaction of algal physiology with environmental variability, addressing the key physiological-environmental controls on the taxonomic distribution of phytoplankton in the Ross Sea. While it is difficult to draw concrete conclusions, the most compelling line of evidence suggests that differing photoprotective capacities is the most important physiological characteristic structuring taxonomic distributions. An appendix presents a design for an infrared absorbance-based instrument for the determination of total dissolved inorganic carbon in seawater.







Upper Ocean Physical and Ecological Dynamics in the Ross Sea, Antarctica


Book Description

This dissertation examines several aspects of the unique physical-biological system that controls biogeochemical cycling in the Ross Sea, the largest continental shelf sea along the Antarctic margin and the most biologically productive region in the Southern Ocean. The core component of the research involves interpretation of data from two oceanographic cruises to the region, one during Summer of 2005--2006 and another in Spring of 2006--2007. Four key research questions are addressed. (1) What physical mechanisms force spatial and temporal variability in mixing depths? (2) How does the dynamic physical environment characteristic of Antarctic continental shelf seas structure distributions of biomass and chemical tracers of production? (3) What key physical and physiological mechanisms control the 13C/12C ratio of organic and inorganic carbon in waters on the Ross Sea continental shelf? and (4) How do physiological variables interact with environmental variability to control phytoplankton taxonomic zonation? Chapter 1 presents an introduction to ocean carbon biogeochemistry and the oceanography of the Southern Ocean and the Ross Sea. Chapter 2 examines the mechanisms effecting early season stratification in the Ross Sea. Lateral advection in the region of upper ocean fronts is shown to be an important mechanism setting early season stratification. Chapter 3 examines several tracer-based methods for estimating upper ocean net community production in the Ross Sea, with explicit recognition of the complexities associated with control volume assumptions and high rates of temporal change. Chapter 4 considers the environmental controls on the distribution of 13C/12C ratios in the Ross Sea. It is shown quantitatively that the two dominant phytoplankton taxa in the Ross Sea have different intrinsic fractionation factors, likely as a result of differing carbon-acquisition physiologies. Air-sea exchange is shown to occur with very noisy fractionation. Finally, Chapter 5 examines the interaction of algal physiology with environmental variability, addressing the key physiological-environmental controls on the taxonomic distribution of phytoplankton in the Ross Sea. While it is difficult to draw concrete conclusions, the most compelling line of evidence suggests that differing photoprotective capacities is the most important physiological characteristic structuring taxonomic distributions. An appendix presents a design for an infrared absorbance-based instrument for the determination of total dissolved inorganic carbon in seawater.




Systems Biogeochemistry of Major Marine Biomes


Book Description

Systems Biogeochemistry of Major Marine Biomes A comprehensive system-level discussion of the geomicrobiology of the Earth’s oceans In Systems Biogeochemistry of Major Marine Biomes, a team of distinguished researchers delivers a systemic overview of biogeochemistry across a number of major physiographies of the global ocean: the waters and sediments overlying continental margins; the deep sub-surfaces; the Arctic and Antarctic oceans; and the physicochemical extremes such as the hypersaline and sulfidic marine zones, cold methane seeps and hydrothermal ecosystems. The book explores state-of-the-art advances in marine geomicrobiology and investigates the drivers of biogeochemical processes. It highlights the imperatives of the unique, fringe, and cryptic processes while studying the geological manifestations and ecological feedbacks of in situ microbial metabolisms. Taking a holistic approach toward the understanding of marine biogeochemical provinces, this book emphasizes the centrality of culture-dependent and culture-independent (meta-omics-based) microbiological information within a systems biogeochemistry framework. Perfect for researchers and scientists in the fields of geochemistry, geophysics, geomicrobiology, oceanography, and marine science, Systems Biogeochemistry of Major Marine Biomes will also earn a place in the libraries of policymakers and advanced graduate students seeking a one-stop reference on marine biogeochemistry.




Exploring Light Controls on Phytoplankton Community Structure and the Biogeochemistry of the Ross Sea, Antarctica


Book Description

The Southern Ocean is one of the most important regions on Earth for absorption of anthropogenic carbon dioxide (CO2) from the atmosphere and long-term storage of that carbon in deep water and ocean sediments. While a significant amount of CO2 enters the deep ocean in this region along oceanographic fronts through the solubility pump, large seasonal phytoplankton blooms form on the Antarctic continental shelf and suggest that the biological pump also plays an important, and possibly underestimated, role in the oceanic sequestration of atmospheric CO2. This dissertation investigates the mechanisms by which light may control phytoplankton species distributions in one of the most productive areas of the Antarctic continental shelf, the Ross Sea. The Ross Sea is commonly dominated by two major phytoplankton species, diatoms, and the haptophyte, Phaeocystis antarctica. The distributions of these species are often correlated with different mixed layer environments, with diatoms dominating shallow mixed layers and P. antarctica dominating deeper mixed layers. Using a series of laboratory experiments, differences were assessed between P. antarctica and the common Ross Sea diatom, Fragilariopsis cylindrus, in their capacity for xanthophyll cycle photoprotection (Chapter 2). This was followed by chemical inhibition experiments that quantified the relative important of xanthophyll cycle photoprotection and the repair of photodamage for maintaining photosynthetic performance in each species. F. cylindrus produced significantly higher concentrations of xanthophyll cycle pigment and epoxidation of activated pigment (diatoxanthin epoxidation to diadinoxanthin) occurred much more slowly upon transition to low light than in P. antarctica. Although both species relied on xanthophyll cycle photoprotection to avoid photoinhibition and maintain maximal photosynthetic rates, P. antarctica was much more adversely affected when repair of photodamage was inhibited. Differences between species in strategies and rates of photoacclimation were also assessed (Chapter 3). F. cylindrus acclimated to shifts in irradiance by adjusting photosynthetic efficiency, with large changes in the functional absorption cross-section of photosystem two ([sigma]PSII) inferred from physiological measurements. P. antarctica exhibited significant changes in both photosynthetic efficiency and the maximum capacity for photosynthesis following shifts in irradiance. Changes in both [sigma]PSII and the number photosynthetic reaction centers or their maximum turnover rate were inferred from physiological measurements. Light was also found to play an important role in controlling elemental ratios in F. cylindrus and P. antarctica (Chapter 4). Particulate organic carbon to nitrogen to phosphorus ratios (C:N:P) varied as a function of growth irradiance in both species, but significant differences between species grown in identical conditions were also observed. F. cylindrus exhibited C:N:P ratios that were significantly lower than those of P. antarctica and often below the Redfield ratio, in agreement with observations from the Ross Sea. In contrast, P. antarctica exhibited ratios above the Redfield ratio when grown in all but very high light conditions. While protein, nucleic acid, and chlorophyll (Chl) concentrations explained the provenance of nearly 100% of particulate N in both species, nucleic acid concentrations were not sufficient to explain particulate P in either species. The remaining P could be partially accounted for if these species produce large concentrations of phospholipids, but storage of inorganic P most likely forms the largest cellular P-pool in nutrient replete cultures. Finally, data from the laboratory experiments were used to calculate phytoplankton growth rates in an ecosystem model of the Ross Sea to test the hypothesis that photophysiological differences between diatoms and P. antarctica can explain their distributions (Chapter 5). The phytoplankton growth model was modified from a previous steady-state model that included four physiological variables, the maximum quantum yield of photosynthesis ([phi]M), the irradiance at which [phi] = 1/2 [phi]M, the carbon to Chl ratio, and mean Chl-specific absorption. The parameters were allowed to vary as a function of mean mixed layer irradiance according to equations derived from laboratory data and acclimation rates measured in light shift experiments. Chl concentrations and distributions of P. antarctica and diatoms in the model agreed well with field observations, demonstrating that light is sufficient to explain phytoplankton community composition in the Ross Sea. These results also demonstrate that physiological information collected from ecologically relevant algal cultures can be used to understand and model phytoplankton dynamics in the natural environment.




Using High-resolution Glider Data and Biogeochemical Modeling to Investigate Phytoplankton Variability in the Ross Sea


Book Description

As Earth’s climate changes, polar environments experience a disproportionate share of extreme shifts. Because the Ross Sea shelf has the highest annual productivity of any Antarctic continental shelf, this region is of particular interest when striving to characterize current and future changes in Antarctic systems. However, understanding of mesoscale variability of biogeochemical patterns in the Ross Sea and how this variability affects assemblage dynamics is incomplete. Furthermore, it is unknown how the Ross Sea may respond to projected warming, reduced summer sea ice concentrations, and shallower mixed layers during the next century. To investigate these dynamics and explore their consequences over the next century, high-resolution glider observations were analyzed and used in conjunction with a one-dimensional, data-assimilative biogeochemical-modeling framework. An analysis of glider observations from two latitudinal sections in the Ross Sea characterized mesoscale variability associated with the phytoplankton bloom and highlighted potential mechanisms driving change in the assemblage. In particular, an observed increase in the ratio of carbon to chlorophyll (C:Chl) suggested a marked transition from a phytoplankton assemblage dominated by Phaeocystis antarctica- to one dominated by diatoms. The expected control of phytoplankton variability by Modified Circumpolar Deep Water and mixed layer depth were shown to be insignificant relative to the effects of wind and sea surface temperature on the temporal/spatial scales measured by the glider. Additional glider measurements were used to force the Model of Ecosystem Dynamics, nutrient Utilisation, Sequestration and Acidification, which was adapted for use in the Ross Sea (MEDUSA-RS) to include both solitary and colonial forms of Phaeocystis antarctica. The impacts of climate-induced changes on Ross Sea phytoplankton were investigated with MEDUSA-RS using projections of physical drivers for mid- and late-21st century, and these experiments indicated increases of primary productivity and carbon export flux. Additional scenario experiments demonstrated that earlier availability of low light due to reduction of sea ice early in the growing season was the primary driver of simulated productivity increases over the next century; shallower mixed layer depths additionally contributed to changes of phytoplankton composition and export. Glider data were assimilated into MEDUSA-RS using the Marine Model Optimization Testbed (MarMOT) to optimize eight phytoplankton model parameters. Assimilation experiments that used different data subsets suggest that assimilating observations at the surface alone, as are typically available from remote-sensing platforms, may underestimate carbon export to depth and overestimate primary production. Experiments assimilating observations characteristic of a cruise-based sampling frequency produced a wide range of solutions, depending on which days were sampled, suggesting the potential for large errors in productivity and export. Finally, assimilating data from different spatial areas resulted in less variation of optimal solutions than assimilating data from different time periods in the bloom progression; these temporal differences are primarily driven by decreasing colonial P. antarctica growth rates, increasing colonial P. antarctica C:Chl, and faster sinking of colonies as the bloom progresses from the accumulation stage through dissipation. Overall, this dissertation research demonstrates the value of using bio-optical glider observations in conjunction with modeling to characterize phytoplankton dynamics in a remote marine ecosystem. High-resolution glider data are better able to resolve mesoscale physical-biological relationships, which are typically not discernible from lower frequency data, but it can be difficult to identify mechanistic relationships from in situ measurements alone. In addition, biogeochemical models can be used to extend insights gained by empirical observation, but application is often limited by the quantity and type of in situ data appropriate for evaluation and forcing. The use of gliders for facilitating development and operation of a lower trophic level model demonstrated the effectiveness of a synthetic approach that partly overcomes the individual limitations of these otherwise distinct approaches. Finally, the combination of these approaches is especially useful for gaining a better understanding of ecosystem dynamics in regions similar to the Ross Sea that are undergoing substantive climate-induced changes and where harsh conditions make other means of access difficult.




Biogeochemistry of Marine Dissolved Organic Matter


Book Description

Biogeochemistry of Marine Dissolved Organic Matter, 3rd edition is the most up-to-date revision of the fundamental reference for the biogeochemistry of marine dissolved organic matter. Since its original publication in June 2002, the science, questions, and priorities have advanced, and the editors of this essential guide, have added nine new chapters, including one on the South China Sea. An indispensable manual edited by the most distinguished experts in the field, this book is addressed to graduate students, marine scientists, and all professionals interested in advancing their knowledge of the field. Features up-to-date knowledge on DOM, including 9 new chapters Presents the only published work to synthesize recent research on dissolved organic carbon in the South China, a region receiving a great deal of attention in recent decades Offers contributions by world-class research leaders




Ocean Biogeochemical Dynamics


Book Description

Ocean Biogeochemical Dynamics provides a broad theoretical framework upon which graduate students and upper-level undergraduates can formulate an understanding of the processes that control the mean concentration and distribution of biologically utilized elements and compounds in the ocean. Though it is written as a textbook, it will also be of interest to more advanced scientists as a wide-ranging synthesis of our present understanding of ocean biogeochemical processes. The first two chapters of the book provide an introductory overview of biogeochemical and physical oceanography. The next four chapters concentrate on processes at the air-sea interface, the production of organic matter in the upper ocean, the remineralization of organic matter in the water column, and the processing of organic matter in the sediments. The focus of these chapters is on analyzing the cycles of organic carbon, oxygen, and nutrients. The next three chapters round out the authors' coverage of ocean biogeochemical cycles with discussions of silica, dissolved inorganic carbon and alkalinity, and CaCO3. The final chapter discusses applications of ocean biogeochemistry to our understanding of the role of the ocean carbon cycle in interannual to decadal variability, paleoclimatology, and the anthropogenic carbon budget. The problem sets included at the end of each chapter encourage students to ask critical questions in this exciting new field. While much of the approach is mathematical, the math is at a level that should be accessible to students with a year or two of college level mathematics and/or physics.