Analyzing Biomolecular Interactions by Mass Spectrometry


Book Description

This monograph reviews all relevant technologies based on mass spectrometry that are used to study or screen biological interactions in general. Arranged in three parts, the text begins by reviewing techniques nowadays almost considered classical, such as affinity chromatography and ultrafiltration, as well as the latest techniques. The second part focusses on all MS-based methods for the study of interactions of proteins with all classes of biomolecules. Besides pull down-based approaches, this section also emphasizes the use of ion mobility MS, capture-compound approaches, chemical proteomics and interactomics. The third and final part discusses other important technologies frequently employed in interaction studies, such as biosensors and microarrays. For pharmaceutical, analytical, protein, environmental and biochemists, as well as those working in pharmaceutical and analytical laboratories.




High-Resolution Continuum Source AAS


Book Description

High-resolution continuum source atomic absorption spectrometry (HR-CS AAS) is the most revolutionary innovation since the introduction of AAS in 1955. Here, the authors provide the first complete and comprehensive discussion of HR-CS AAS and its application to the analysis of a variety of difficult matrices. Published just in time with the first commercial instrument available for this new technique, the book is a must for all those who want to know more about HR-CS AAS, and in particular for all future users. The advantages of the new technique over conventional line-source AAS are clearly demonstrated using practical examples and numerous figures, many in full color. HR-CS AAS is overcoming essentially all the remaining limitations of established AAS, particularly the notorious problem of accurate background measurement and correction. Using a continuum radiation source and a CCD array detector makes the spectral environment visible to several tenths of a nanometer on both sides of the analytical line, tremendously facilitating method development and elimination of interferences. Conceived as a supplement to the standard reference work on AAS by B. Welz and M. Sperling, this book does not repeat such fundamentals as the principles of atomizers or atomization mechanisms. Instead, it is strictly focused on new and additional information required to profit from HR-CS AAS. It presents characteristic concentration for flame atomization and characteristic mass data for electrothermal atomization for all elements, as well as listing numerous secondary lines of lower sensitivity for the determination of higher analyte concentrations. The highly resolved molecular absorption spectra of nitric, sulfuric and phosphoric acids, observed in an air-acetylene flame, which are depicted together with the atomic lines of all elements, make it possible to predict potential spectral interferences.




Guide to Fluorine NMR for Organic Chemists


Book Description

Following its well-received predecessor, this book offers an essential guide to chemists for understanding fluorine in spectroscopy. With over 1000 compounds and 100 spectra, the second edition adds new data – featuring fluorine effects on nitrogen NMR, chemical shifts, and coupling constants. • Explains how to successfully incorporate fluorine into target molecules and utilize fluorine substituents to structurally characterize organic compounds • Includes new data on nitrogen NMR, focusing on N-15, to portray the influence of fluorine upon nitrogen NMR chemical shifts and coupling constants • Expands on each chapter from the first edition with additional data and updated discussion from recent findings • "The flawless ordering of material covered in this stand-alone volume is such that information can be found very easily." – Angewandte Chemie review of the first edition, 2010




Determination of the Relative Amount of Fluorine in Uranium Oxyfluoride Particles Using Secondary Ion Mass Spectrometry and Optical Spectroscopy


Book Description

Both nuclear forensics and environmental sampling depend upon laboratory analysis of nuclear material that has often been exposed to the environment after it has been produced. It is therefore important to understand how those environmental conditions might have changed the chemical composition of the material over time, particularly for chemically sensitive compounds. In the specific case of uranium enrichment facilities, uranium-bearing particles stem from small releases of uranium hexafluoride, a highly reactive gas that hydrolyzes upon contact with moisture from the air to form uranium oxyfluoride (UO2F2) particles. The uranium isotopic composition of those particles is used by the International Atomic Energy Agency (IAEA) to verify whether a facility is compliant with its declarations. The present study, however, aims to demonstrate how knowledge of time-dependent changes in chemical composition, particle morphology and molecular structure can contribute to an even more reliable interpretation of the analytical results. We prepared a set of uranium oxyfluoride particles at the Institute for Reference Materials and Measurements (IRMM, European Commission, Belgium) and followed changes in their composition, morphology and structure with time to see if we could use these properties to place boundaries on the particle exposure time in the environment. Because the rate of change is affected by exposure to UV-light, humidity levels and elevated temperatures, the samples were subjected to varying conditions of those three parameters. The NanoSIMS at LLNL was found to be the optimal tool to measure the relative amount of fluorine in individual uranium oxyfluoride particles. At PNNL, cryogenic laser-induced time-resolved U(VI) fluorescence microspectroscopy (CLIFS) was used to monitor changes in the molecular structure.




Characterization and Identification of Per- and Polyfluoroalkyl Substances (PFAS) in the Environment and Consumer Products Via High-resolution Mass Spectrometry and Oxidative Conversion


Book Description

Per- and polyfluoroalkyl substances (PFAS) are a large group of anthropogenic organic chemicals that are characterized by their carbon fluorine bonds. Due to their unique characteristics that include high stability, oil- and water-repellent properties and more, they are used in countless consumer products and industrial processes. While in perfluorinated compounds every C-H bond is substituted by a C-F bond, polyfluorinated compounds are only partially fluorinated and consist also of a hydrocarbon part. The fully fluorinated moieties of PFAS, usually perfluoroalkyl or perfluoroether chains, are extremely persistent in the environment. As a result of this persistence combined with the extensive use, PFAS can be detected everywhere in the environment as well as in humans. While some polyfluorinated compounds are partially transformed in the environment, they eventually form persistent end products such as perfluoroalkyl acids (PFAAs) which is why they are also referred to as precursors. The sheer number of individual PFAS makes their analytical detection very challenging. Since PFAS are industrial chemicals, the availability of reference standards is limited. Therefore, chromatographic techniques coupled to high-resolution mass spectrometry (HRMS) are necessary for a more comprehensive characterization of the PFAS in the environment. In the first part of this dissertation, methods for a prioritization and subsequent identification of PFAS in both environmental and consumer product samples were developed and validated in selected case studies. Since during so-called non-target screening (NTS), large datasets are acquired, an efficient prioritization is crucial to isolate the analytes of interest from background signals and other detected compounds. In case of PFAS, their intrinsic properties were used to separate them from other organic compounds in the HRMS datasets. The novel MD/C-m/C approach that uses the chemical mass defect (MD) and the mass (m) normalized to the carbon number (C) was theoretically evaluated with ~490,000 chemical formulas from online database to show that a wide range of PFAS can efficiently be separated from non-PFAS in the presence of other substances. PFAS with at least 55 mass percent of fluorine, a F/C ratio > 0.8, or a H/F ratio 0.8 were separable from other compound classes showing the great potential to remove unwanted compounds from HRMS datasets. To also prioritize PFAS fragmentation spectra, important fragment mass difference (or neutral losses) of common PFAS were determined, evaluated, and used to detect MS/MS spectra and identify PFAS in both extracts of coated papers and soils. This approach, combined with other NTS techniques was used to identify and semi-quantify several novel PFAS in a highly contaminated agricultural soil from north-western Germany where over 70 PFAS were detected that were previously unknown on this site. The total concentration was estimated to be 30 mg/kg total identified PFAS. Furthermore, the contamination was almost entirely dominated by perfluorinated compounds including SF5-perfluoroalkyl sulfonic acids which indicated a unique source of contamination. Eventually, several existing and here developed NTS techniques were combined into PF∆Screen, an open-source Python-based NTS tool for a vendor-independent prioritization and partial annotation of PFAS in HRMS raw data. The functionality of PF∆Screen was demonstrated by its application to four contaminated soils from south-western Germany where over 80 PFAS were identified including novel transformation products. In the second part, a photocatalytic oxidation method (PhotoTOP) was developed that allows the quantitative conversion of unknown precursors to their terminal end products perfluoroalkyl carboxylic acids (PFCAs). The PhotoTOP uses the production of hydroxyl radicals from irradiation of TiO2 (UV/TiO2) for the conversion of precursors in different samples and is complementary to the total oxidizable precursor (TOP) assay. Known precursors could be quantitatively oxidized to PFCAs and the PhotoTOP was shown to be able to almost completely conserve the perfluoroalkyl chain lengths of the oxidized precursors. This allows the prediction of chain-lengths of unknown precursors and was demonstrated by oxidation of pre-characterized PFAS-coated paper samples. A second promising advantage of the PhotoTOP is the absence of salts which simplified subsequent sample preparation and makes further direct injection with electrospray ionization MS possible. To this end, the PhotoTOP was compared with the performance of complementary methods such as the direct TOP assay, hydrolysis (total hydrolysable precursors) and fluorine sum parameters (extractable organic fluorine and total fluorine; measured by the Federal Institute for Materials Research and Testing (BAM)) to characterize non-extractable side-chain fluorinated polymers (SFPs) in functional textiles. It was shown that several textiles contained high concentrations of short and long-chain perfluoroalkyl side chains that are not extractable and therefore not amenable to mass spectrometry without prior chemical conversion.




Organic Trace Analysis


Book Description

Organic contaminants even in very low concentrations can have toxic and ecotoxic effects on exposed organisms. Detection and quantification of such trace amounts in diverging matrices (e.g., water, air, soil, food, tissue, organisms) is challenging and great carefulness and strategic thinking is needed to get reliable results along the way from taking samples up to the final analysis. In the 2nd edition, besides revisions of existing chapters, new analytical technologies and recent application examples are presented: non-target mass spectrometric analysis, trace analysis of per- and polyfluoroalkylated "forever chemicals", organophosphorus esters (nerve agents), and micro- and nanoplastic particles in the environment. Students will learn about peculiarities and state of the art organic trace analysis and acquire basic and advanced principles of statistical evaluation of analytical results quality control strategies and good laboratory practices sampling techniques from various matrices sample treatment, enrichment and clean-up techniques chromatographic analyses including hyphenated techniques, and spectroscopy as well mass spectrometry and bioanalytical tools. An extended chapter on selected applications will transfer the theoretical understanding into applied scientific problems. Students will profit from a comprehensive and state of the art overview of organic trace analyses and from an extensive collection of relevant literature.










Per and polyfluorinated substances in the Nordic Countries


Book Description

This Tema Nord report presents a study based on open information and custom market research to review the most common perfluorinated substances (PFC) with less focus on PFOS and PFOA. The study includes three major parts:1) Identification of relevant per-and polyfluorinated substances and their use in various industrial sectors in the Nordic market by interviews with major players and database information; 2) Emissions to and occurence in the Nordic environment of the substances described in 1); 3) A summary of knowledge of the toxic effects on humans and the environment of substances prioritized in 2); There is a lack of physical chemical data, analystical reference substances, human and environmental occurrence and toxicology data, as well as market information regarding PFCs other than PFOA and PFOS and the current legislation cannot enforce disclosure of specific PFC substance information.