Forest Analytics with R


Book Description

Forest Analytics with R combines practical, down-to-earth forestry data analysis and solutions to real forest management challenges with state-of-the-art statistical and data-handling functionality. The authors adopt a problem-driven approach, in which statistical and mathematical tools are introduced in the context of the forestry problem that they can help to resolve. All the tools are introduced in the context of real forestry datasets, which provide compelling examples of practical applications. The modeling challenges covered within the book include imputation and interpolation for spatial data, fitting probability density functions to tree measurement data using maximum likelihood, fitting allometric functions using both linear and non-linear least-squares regression, and fitting growth models using both linear and non-linear mixed-effects modeling. The coverage also includes deploying and using forest growth models written in compiled languages, analysis of natural resources and forestry inventory data, and forest estate planning and optimization using linear programming. The book would be ideal for a one-semester class in forest biometrics or applied statistics for natural resources management. The text assumes no programming background, some introductory statistics, and very basic applied mathematics.




Doing Meta-Analysis with R


Book Description

Doing Meta-Analysis with R: A Hands-On Guide serves as an accessible introduction on how meta-analyses can be conducted in R. Essential steps for meta-analysis are covered, including calculation and pooling of outcome measures, forest plots, heterogeneity diagnostics, subgroup analyses, meta-regression, methods to control for publication bias, risk of bias assessments and plotting tools. Advanced but highly relevant topics such as network meta-analysis, multi-three-level meta-analyses, Bayesian meta-analysis approaches and SEM meta-analysis are also covered. A companion R package, dmetar, is introduced at the beginning of the guide. It contains data sets and several helper functions for the meta and metafor package used in the guide. The programming and statistical background covered in the book are kept at a non-expert level, making the book widely accessible. Features • Contains two introductory chapters on how to set up an R environment and do basic imports/manipulations of meta-analysis data, including exercises • Describes statistical concepts clearly and concisely before applying them in R • Includes step-by-step guidance through the coding required to perform meta-analyses, and a companion R package for the book




Biometry for Forestry and Environmental Data


Book Description

Biometry for Forestry and Environmental Data with Examples in R focuses on statistical methods that are widely applicable in forestry and environmental sciences, but it also includes material that is of wider interest. Features: · Describes the theory and applications of selected statistical methods and illustrates their use and basic concepts through examples with forestry and environmental data in R. · Rigorous but easily accessible presentation of the linear, nonlinear, generalized linear and multivariate models, and their mixed-effects counterparts. Chapters on tree size, tree taper, measurement errors, and forest experiments are also included. · Necessary statistical theory about random variables, estimation and prediction is included. The wide applicability of the linear prediction theory is emphasized. · The hands-on examples with implementations using R make it easier for non-statisticians to understand the concepts and apply the methods with their own data. Lot of additional material is available at www.biombook.org. The book is aimed at students and researchers in forestry and environmental studies, but it will also be of interest to statisticians and researchers in other fields as well.




Data Science in Education Using R


Book Description

Data Science in Education Using R is the go-to reference for learning data science in the education field. The book answers questions like: What does a data scientist in education do? How do I get started learning R, the popular open-source statistical programming language? And what does a data analysis project in education look like? If you’re just getting started with R in an education job, this is the book you’ll want with you. This book gets you started with R by teaching the building blocks of programming that you’ll use many times in your career. The book takes a "learn by doing" approach and offers eight analysis walkthroughs that show you a data analysis from start to finish, complete with code for you to practice with. The book finishes with how to get involved in the data science community and how to integrate data science in your education job. This book will be an essential resource for education professionals and researchers looking to increase their data analysis skills as part of their professional and academic development.




The R Book


Book Description

The high-level language of R is recognized as one of the mostpowerful and flexible statistical software environments, and israpidly becoming the standard setting for quantitative analysis,statistics and graphics. R provides free access to unrivalledcoverage and cutting-edge applications, enabling the user to applynumerous statistical methods ranging from simple regression to timeseries or multivariate analysis. Building on the success of the author’s bestsellingStatistics: An Introduction using R, The R Book ispacked with worked examples, providing an all inclusive guide to R,ideal for novice and more accomplished users alike. The bookassumes no background in statistics or computing and introduces theadvantages of the R environment, detailing its applications in awide range of disciplines. Provides the first comprehensive reference manual for the Rlanguage, including practical guidance and full coverage of thegraphics facilities. Introduces all the statistical models covered by R, beginningwith simple classical tests such as chi-square and t-test. Proceeds to examine more advance methods, from regression andanalysis of variance, through to generalized linear models,generalized mixed models, time series, spatial statistics,multivariate statistics and much more. The R Book is aimed at undergraduates, postgraduates andprofessionals in science, engineering and medicine. It is alsoideal for students and professionals in statistics, economics,geography and the social sciences.




Statistics in Natural Resources


Book Description

To manage our environment sustainably, professionals must understand the quality and quantity of our natural resources. Statistical analysis provides information that supports management decisions and is universally used across scientific disciplines. Statistics in Natural Resources: Applications with R focuses on the application of statistical analyses in the environmental, agricultural, and natural resources disciplines. This is a book well suited for current or aspiring natural resource professionals who are required to analyze data and perform statistical analyses in their daily work. More seasoned professionals who have previously had a course or two in statistics will also find the content familiar. This text can also serve as a bridge between professionals who understand statistics and want to learn how to perform analyses on natural resources data in R. The primary goal of this book is to learn and apply common statistical methods used in natural resources by using the R programming language. If you dedicate considerable time to this book, you will: Develop analytical and visualization skills for investigating the behavior of agricultural and natural resources data. Become competent in importing, analyzing, and visualizing complex data sets in the R environment. Recode, combine, and restructure data sets for statistical analysis and visualization. Appreciate probability concepts as they apply to environmental problems. Understand common distributions used in statistical applications and inference. Summarize data effectively and efficiently for reporting purposes. Learn the tasks required to perform a variety of statistical hypothesis tests and interpret their results. Understand which modeling frameworks are appropriate for your data and how to interpret predictions. Includes over 130 exercises in R, with solutions available on the book’s website.




R for Everyone


Book Description

Statistical Computation for Programmers, Scientists, Quants, Excel Users, and Other Professionals Using the open source R language, you can build powerful statistical models to answer many of your most challenging questions. R has traditionally been difficult for non-statisticians to learn, and most R books assume far too much knowledge to be of help. R for Everyone, Second Edition, is the solution. Drawing on his unsurpassed experience teaching new users, professional data scientist Jared P. Lander has written the perfect tutorial for anyone new to statistical programming and modeling. Organized to make learning easy and intuitive, this guide focuses on the 20 percent of R functionality you’ll need to accomplish 80 percent of modern data tasks. Lander’s self-contained chapters start with the absolute basics, offering extensive hands-on practice and sample code. You’ll download and install R; navigate and use the R environment; master basic program control, data import, manipulation, and visualization; and walk through several essential tests. Then, building on this foundation, you’ll construct several complete models, both linear and nonlinear, and use some data mining techniques. After all this you’ll make your code reproducible with LaTeX, RMarkdown, and Shiny. By the time you’re done, you won’t just know how to write R programs, you’ll be ready to tackle the statistical problems you care about most. Coverage includes Explore R, RStudio, and R packages Use R for math: variable types, vectors, calling functions, and more Exploit data structures, including data.frames, matrices, and lists Read many different types of data Create attractive, intuitive statistical graphics Write user-defined functions Control program flow with if, ifelse, and complex checks Improve program efficiency with group manipulations Combine and reshape multiple datasets Manipulate strings using R’s facilities and regular expressions Create normal, binomial, and Poisson probability distributions Build linear, generalized linear, and nonlinear models Program basic statistics: mean, standard deviation, and t-tests Train machine learning models Assess the quality of models and variable selection Prevent overfitting and perform variable selection, using the Elastic Net and Bayesian methods Analyze univariate and multivariate time series data Group data via K-means and hierarchical clustering Prepare reports, slideshows, and web pages with knitr Display interactive data with RMarkdown and htmlwidgets Implement dashboards with Shiny Build reusable R packages with devtools and Rcpp Register your product at informit.com/register for convenient access to downloads, updates, and corrections as they become available.




Data Mining with Rattle and R


Book Description

Data mining is the art and science of intelligent data analysis. By building knowledge from information, data mining adds considerable value to the ever increasing stores of electronic data that abound today. In performing data mining many decisions need to be made regarding the choice of methodology, the choice of data, the choice of tools, and the choice of algorithms. Throughout this book the reader is introduced to the basic concepts and some of the more popular algorithms of data mining. With a focus on the hands-on end-to-end process for data mining, Williams guides the reader through various capabilities of the easy to use, free, and open source Rattle Data Mining Software built on the sophisticated R Statistical Software. The focus on doing data mining rather than just reading about data mining is refreshing. The book covers data understanding, data preparation, data refinement, model building, model evaluation, and practical deployment. The reader will learn to rapidly deliver a data mining project using software easily installed for free from the Internet. Coupling Rattle with R delivers a very sophisticated data mining environment with all the power, and more, of the many commercial offerings.




Introduction to Data Science


Book Description

Introduction to Data Science: Data Analysis and Prediction Algorithms with R introduces concepts and skills that can help you tackle real-world data analysis challenges. It covers concepts from probability, statistical inference, linear regression, and machine learning. It also helps you develop skills such as R programming, data wrangling, data visualization, predictive algorithm building, file organization with UNIX/Linux shell, version control with Git and GitHub, and reproducible document preparation. This book is a textbook for a first course in data science. No previous knowledge of R is necessary, although some experience with programming may be helpful. The book is divided into six parts: R, data visualization, statistics with R, data wrangling, machine learning, and productivity tools. Each part has several chapters meant to be presented as one lecture. The author uses motivating case studies that realistically mimic a data scientist’s experience. He starts by asking specific questions and answers these through data analysis so concepts are learned as a means to answering the questions. Examples of the case studies included are: US murder rates by state, self-reported student heights, trends in world health and economics, the impact of vaccines on infectious disease rates, the financial crisis of 2007-2008, election forecasting, building a baseball team, image processing of hand-written digits, and movie recommendation systems. The statistical concepts used to answer the case study questions are only briefly introduced, so complementing with a probability and statistics textbook is highly recommended for in-depth understanding of these concepts. If you read and understand the chapters and complete the exercises, you will be prepared to learn the more advanced concepts and skills needed to become an expert.




Ecological Forest Management Handbook


Book Description

The second edition of Ecological Forest Management Handbook continues to provide forestry professionals and students with basic principles of ecological forest management and their applications at regional and site-specific levels. Thoroughly updated and revised, the handbook addresses numerous topics and explains that ecological forest management is a complex process that requires broad ecological knowledge. It discusses how to develop adaptive management scenarios to harvest resources in a sustainable way and provide ecosystem services and social functions. It includes new studies on ecological indicators, the carbon cycle, and ecosystem simulation models for various forest types: boreal, temperate, and tropical forests. NEW IN THE SECOND EDITION Provides a comprehensive collection of sustainable forest management principles and their applications Covers new ecological indicators that can be applied to address forest environmental issues Includes all types of models: empirical, gap, and process-based models Explains several basic ecological and management concepts in a clear, easy-to- understand manner This handbook is intended for researchers, academics, professionals, and undergraduate and graduate students studying and/or involved in the management of forest ecosystems. Chapter 18 of this book is available for free in PDF format as Open Access from the individual product page at www.taylorfrancis.com. It has been made available under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 license.