Matlab® in Bioscience and Biotechnology


Book Description

MATLAB® in bioscience and biotechnology presents an introductory Matlab course oriented towards various collaborative areas of biotechnology and bioscience. It concentrates on Matlab fundamentals and gives examples of its application to a wide range of current bioengineering problems in computational biology, molecular biology, bio-kinetics, biomedicine, bioinformatics, and biotechnology. In the last decade Matlab has been presented to students as the first computer program they learn. Consequently, many non-programmer students, engineers and scientists have come to regard it as user-friendly and highly convenient in solving their specific problems. Numerous books are available on programming in Matlab for engineers in general, irrespective of their specialization, or for those specializing in some specific area, but none have been designed especially for such a wide, interdisciplinary, and topical area as bioengineering. Thus, in this book, Matlab is presented with examples and applications to various school-level and advanced bioengineering problems - from growing populations of microorganisms and population dynamics, reaction kinetics and reagent concentrations, predator-prey models, mass-transfer and flow problems, to sequence analysis and sequence statistics. This is the first book intended as a manual introducing biologists and other biotechnology engineers to work with Matlab It is suitable for beginners and inexperienced users; however, applications of Matlab to advanced problems such as the Monte Carlo method, curve fitting, and reliable machine diagnostics make the book relevant to university teachers as well The book is different in that it assumes a modest mathematical background for the reader and introduces the mathematical or technical concepts with a somewhat traditional approach; Matlab is then used as a tool for subsequent computer solution




Introduction to MATLAB® for Biologists


Book Description

This textbook takes you from the very first time you open MATLAB® through to a position where you can comfortably integrate this computer language into your research or studies. The book will familiarise you with the MATLAB interface, show you how to use the program ́s built-in functions and carefully guide you towards creating your own functions and scripts so that you can use MATLAB as a sophisticated tool to support your own research. A central aim of this book is to provide you with the core knowledge and skills required to become a confident MATLAB user so that you can find and make use of the many specialist functions and toolboxes that have been developed to support a wide range of biological applications. Examples presented within the book are selected to be relevant to biological scientists and they illustrate some of the many ways the program can be incorporated into, and used to enhance, your own research and studies. The textbook is a must-have for students and researchers in the biological sciences. It will also appeal to readers of all backgrounds who are looking for an introduction to MATLAB which is suitable for those with little or no experience of programming.




Introduction to MATLAB for Biologists


Book Description

This textbook takes you from the very first time you open MATLAB® through to a position where you can comfortably integrate this computer language into your research or studies. The book will familiarise you with the MATLAB interface, show you how to use the program ́s built-in functions and carefully guide you towards creating your own functions and scripts so that you can use MATLAB as a sophisticated tool to support your own research. A central aim of this book is to provide you with the core knowledge and skills required to become a confident MATLAB user so that you can find and make use of the many specialist functions and toolboxes that have been developed to support a wide range of biological applications. Examples presented within the book are selected to be relevant to biological scientists and they illustrate some of the many ways the program can be incorporated into, and used to enhance, your own research and studies. The textbook is a must-have for students and researchers in the biological sciences. It will also appeal to readers of all backgrounds who are looking for an introduction to MATLAB which is suitable for those with little or no experience of programming.




Fundamentals of Bioinformatics and Computational Biology


Book Description

This book offers comprehensive coverage of all the core topics of bioinformatics, and includes practical examples completed using the MATLAB bioinformatics toolboxTM. It is primarily intended as a textbook for engineering and computer science students attending advanced undergraduate and graduate courses in bioinformatics and computational biology. The book develops bioinformatics concepts from the ground up, starting with an introductory chapter on molecular biology and genetics. This chapter will enable physical science students to fully understand and appreciate the ultimate goals of applying the principles of information technology to challenges in biological data management, sequence analysis, and systems biology. The first part of the book also includes a survey of existing biological databases, tools that have become essential in today’s biotechnology research. The second part of the book covers methodologies for retrieving biological information, including fundamental algorithms for sequence comparison, scoring, and determining evolutionary distance. The main focus of the third part is on modeling biological sequences and patterns as Markov chains. It presents key principles for analyzing and searching for sequences of significant motifs and biomarkers. The last part of the book, dedicated to systems biology, covers phylogenetic analysis and evolutionary tree computations, as well as gene expression analysis with microarrays. In brief, the book offers the ideal hands-on reference guide to the field of bioinformatics and computational biology.




Primary MATLAB® for Life Sciences: Guide for Beginners


Book Description

This e-book provides readers a short introductory MATLAB® course oriented towards various collaborative areas of biotechnology and bioscience. The text concentrates on MATLAB® fundamentals and gives examples of its application for various problems in computational biology, molecular biology, biokinetics, biomedicine, bioinformatics, and biotechnology. MATLAB® is presented with examples and applications to various school-level and advanced life science / bioengineering problems - from growing populations of microorganisms and population dynamics, reaction kinetics and reagent concentrations, predator-prey models, to data fitting and time series analysis. The book is divided into 6 chapters containing material carefully selected and tailored to teaching several groups of biotechnology students. The topics are presented in a manner that allows readers to proceed sequentially on the strength of the preceding material. Primary MATLAB® for Life Sciences: A Guide for Beginners is essentially a concise and comprehensive text that provides an easy grasp and to-the-point access to the MATLAB® tool to the community of life sciences and bioengneering undergraduates and specialists.




Quantitative Biosciences Companion in MATLAB


Book Description

A hands-on lab guide in the MATLAB programming language that enables students in the life sciences to reason quantitatively about living systems across scales This lab guide accompanies the textbook Quantitative Biosciences, providing students with the skills they need to translate biological principles and mathematical concepts into computational models of living systems. This hands-on guide uses a case study approach organized around central questions in the life sciences, introducing landmark advances in the field while teaching students—whether from the life sciences, physics, computational sciences, engineering, or mathematics—how to reason quantitatively in the face of uncertainty. Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communities Encourages good coding practices, clear and understandable modeling, and accessible presentation of results Helps students to develop a diverse repertoire of simulation approaches, enabling them to model at the appropriate scale Builds practical expertise in a range of methods, including sampling from probability distributions, stochastic branching processes, continuous time modeling, Markov chains, bifurcation analysis, partial differential equations, and agent-based simulations Bridges the gap between the classroom and research discovery, helping students to think independently, troubleshoot and resolve problems, and embark on research of their own Stand-alone computational lab guides for Quantitative Biosciences also available in Python and R




Primary Matlab® for Life Sciences


Book Description

Annotation This e-book provides readers a short introductory MATLAB® course oriented towards various collaborative areas of biotechnology and bioscience. the text concentrates on MATLAB® fundamentals and gives examples of its application for various problems in computational biology, molecular biology, biokinetics, biomedicine, bioinformatics, and biotechnology. MATLAB® is presented with examples and applications to various school-level and advanced life science / bioengineering problems - from growing populations of microorganisms and population dynamics, reaction kinetics and reagent concentrations, predator-prey models, to data fitting and time series analysis. The book is divided into 6 chapters containing material carefully selected and tailored to teaching several groups of biotechnology students. the topics are presented in a manner that allows readers to proceed sequentially on the strength of the preceding material. Primary MATLAB® for Life Sciences: a Guide for Beginners is essentially a concise and comprehensive text that provides an easy grasp and to-the-point access to the MATLAB® tool to the community of life sciences and bioengneering undergraduates and specialists.




Numerical and Statistical Methods for Bioengineering


Book Description

The first MATLAB-based numerical methods textbook for bioengineers that uniquely integrates modelling concepts with statistical analysis, while maintaining a focus on enabling the user to report the error or uncertainty in their result. Between traditional numerical method topics of linear modelling concepts, nonlinear root finding, and numerical integration, chapters on hypothesis testing, data regression and probability are interweaved. A unique feature of the book is the inclusion of examples from clinical trials and bioinformatics, which are not found in other numerical methods textbooks for engineers. With a wealth of biomedical engineering examples, case studies on topical biomedical research, and the inclusion of end of chapter problems, this is a perfect core text for a one-semester undergraduate course.




Research Methodology in Bioscience and Biotechnology


Book Description

This monograph offers a comprehensive guide to good research practices and mindsets, covering a wide range of topics across 8 chapters. Readers will find numerous themes and strategies that can help them develop their research skills and achieve their objectives, from effective proposal writing to stress management and upskilling. This book explains the purpose, process, tips, and mistakes of writing proposals, theses, articles, and reviews in clear and straightforward language, allowing readers to develop good research plans. By applying the advice and insights offered in this book, students and researchers can improve the quality of their work, cultivate research integrity, and develop good publication plans, write well, and reduce rejection rates. Research outputs will be more likely to be of high quality if students and researchers are encouraged to cultivate these pieces of advice. The focus of the book is not solely on the outcomes of research. Rather, it also delves into mindset, habits, adaptability, time management, stress management, recent tools for upskilling, planning, and execution. Throughout the book, the author seeks to instill a growth mindset in the readers, encouraging them to develop positive research habits and behaviors. KPIs, particularly publications, shall not be used as a reason to erode research integrity and ethnicity; therefore, plagiarism, self-citation, falsifying data, exaggerating findings, authorship in publications, the use of AI tools, CRediT, and COPE are discussed. This book contains interviews with high-profile researchers, top management at institutions, policy advisers, etc., whose opinions and advice the readers will find valuable. Overall, this all-in-one guide is an essential resource for postgraduate students, post-doctoral fellows, and academics who are struggling to find a survival strategy in the rapidly changing research environment. The book assists readers in developing right mindset, planning their research and publications, and in achieving their predetermined objectives.




MATLAB for Engineering and the Life Sciences


Book Description

In recent years, the life sciences have embraced simulation as an important tool in biomedical research. Engineers are also using simulation as a powerful step in the design process. In both arenas, Matlab has become the gold standard. It is easy to learn, flexible, and has a large and growing userbase. MATLAB for Engineering and the Life Sciences is a self-guided tour of the basic functionality of MATLAB along with the functions that are most commonly used in biomedical engineering and other life sciences. Although the text is written for undergraduates, graduate students and academics, those in industry may also find value in learning MATLAB through biologically inspired examples. For instructors, the book is intended to take the emphasis off of learning syntax so that the course can focus more on algorithmic thinking. Although it is not assumed that the reader has taken differential equations or a linear algebra class, there are short introductions to many of these concepts. Following a short history of computing, the MATLAB environment is introduced. Next, vectors and matrices are discussed, followed by matrix-vector operations. The core programming elements of MATLAB are introduced in three successive chapters on scripts, loops, and conditional logic. The last three chapters outline how to manage the input and output of data, create professional quality graphics and find and use Matlab toolboxes. Throughout, biomedical examples are used to illustrate MATLAB's capabilities. Table of Contents: Introduction / Matlab Programming Environment / Vectors / Matrices / Matrix -- Vector Operations / Scripts and Functions / Loops / Conditional Logic / Data In, Data Out / Graphics / Toolboxes