Microbial Connections Between the Subsurface Sulfur Cycle and Other Elemental Cycles


Book Description

Sulfur has many redox states and is a major metabolite in suboxic and anaerobic environments including, but not restricted to, marine and marginal marine sediments, the water column of oxygen minimum zones, salt marshes and oil wells. Microbially mediated redox cycling of sulfur typically comprises dissimilatory sulfate reduction (MSR), sulfide reoxidation, disproportionation and the oxidation and reduction of sulfur redox intermediates. These processes contribute to the degradation of organic matter, link the cycles of sulfur and carbon, control the production and consumption of methane and are critical for the long term budget of O2 in the atmosphere. Microbial and abiotic processes at redox interfaces also connect the sulfur cycle to the redox cycles of nitrogen, iron and other elements, producing distinctive geochemical and molecular signatures. Studies that couple microbiology with stable isotope geochemistry have informed interpretations of microbial sulfur cycling in modern and past environments. Laboratory-based studies and models of MSR have sought to understand the physiological and environmental controls of the magnitude of sulfur isotope fractionation. The fractionations of stable sulfur and oxygen isotopes during MSR are also used to track enzymatic activity during MSR and processes that oxidize sulfide in the presence of environmental oxidants. Outstanding questions in the field concern the importance of oxidative processes within the natural environment, the delivery of oxidants and carbon sources to the zones of sulfate reduction and the ability to detect or reconstruct oxidative processes from the chemical, isotopic, metagenomic, transcriptomic, proteomic and metabolomics profiles in the environment. Recent studies have emphasized the complex connections between sulfur and methane, iron, nitrogen and other elements. These links may involve the redox cycling of species that occur at concentrations difficult to detect by standard geochemical techniques or that are cycled at very rapid rates (cryptic cycles). Of particular interest is the use of isotope geochemistry to quantify links among various electron acceptors, including sulfate, ferric iron, and nitrate, during the anaerobic methane oxidation. For example, recent geochemical measurements have hinted that microbial sulfate reduction coupled to organic matter oxidation is mechanistically different to when sulfate reduction is coupled to methane oxidation. Recent studies have also suggested a possible contribution of a number of previously uncultured microbial groups in sulfur cycling in sulfidic environments, inspiring further studies of these organisms and their partnerships in anaerobic environments. This Research Topic highlights studies of microbial interactions, processes and communities that couple the sulfur cycle to the cycles of other elements in aphotic environments.




The Microbiology of Nuclear Waste Disposal


Book Description

The Microbiology of Nuclear Waste Disposal is a state-of-the-art reference featuring contributions focusing on the impact of microbes on the safe long-term disposal of nuclear waste. This book is the first to cover this important emerging topic, and is written for a wide audience encompassing regulators, implementers, academics, and other stakeholders. The book is also of interest to those working on the wider exploitation of the subsurface, such as bioremediation, carbon capture and storage, geothermal energy, and water quality. Planning for suitable facilities in the U.S., Europe, and Asia has been based mainly on knowledge from the geological and physical sciences. However, recent studies have shown that microbial life can proliferate in the inhospitable environments associated with radioactive waste disposal, and can control the long-term fate of nuclear materials. This can have beneficial and damaging impacts, which need to be quantified. - Encompasses expertise from both the bio and geo disciplines, aiming to foster important collaborations across this disciplinary divide - Includes reviews and research papers from leading groups in the field - Provides helpful guidance in light of plans progressing worldwide for geological disposal facilities - Includes timely research for planning and safety case development







Concepts of Biology


Book Description

Black & white print. Concepts of Biology is designed for the typical introductory biology course for nonmajors, covering standard scope and sequence requirements. The text includes interesting applications and conveys the major themes of biology, with content that is meaningful and easy to understand. The book is designed to demonstrate biology concepts and to promote scientific literacy.







Allies and Enemies


Book Description

Bacteria are invisible, mysterious, deadly, self-sufficient…and absolutely essential for all life, including yours. No other living things combine their elegant simplicity with their incredibly complex role: Bacteria keep us alive, supply our food, and regulate our biosphere. We can’t live a day without them, and no chemical, antibiotic, or irradiation has ever successfully eradicated them. They’re our partners, like it or not--even though some of them will happily kill us. Allies and Enemies tells the story of this amazing, intimate partnership. Authored by Anne Maczulak, a microbiologist who’s hunted and worked with an extraordinary array of bacteria, this book offers a powerful new perspective on Earth’s oldest creatures. You’ll discover how bacteria work, how they evolve, their surprising contributions and uses, the roles they’ve played in human history, and why you can't survive without them. No form of life is more important, and in Maczulak’s hands, none is more fascinating. Outlasted, outnumbered, outsmarted They’ve been here four billion years--and they even outnumber you in your own body How bacteria keep you alive… …and how to keep them from killing you “Humans Defeat Germs!” But not for long… The Invisible Universe The stunning hidden relationships between bacteria and the rest of nature




Extremophilic Microbial Processing of Lignocellulosic Feedstocks to Biofuels, Value-Added Products, and Usable Power


Book Description

This book presents a review and in-depth analyses of improved biotechnological processes emphasizing critical aspects and challenges of lignocellulosic biomass conversion into biofuels and value-added products especially using extremophiles and recombinant microorganisms. The book specifically comprises extremophilic production of liquid and gaseous biofuels (bioethanol, biobutanol, biodiesel, biohydrogen, and biogas) as well as value added products (e.g. single cell protein, hydrocarbons, lipids, exopolysaccharides, and polyhydroxyalkanoates). The book also provides the knowledge on how to develop safe, more efficient, sustainable, and economical integrated processes for enhanced conversion of lignocellulosic feedstocks to liquid and gaseous biofuels. Finally the book describes how to perform the techno-economical and life-cycle assessments of new integrated processes involving extremophiles. These modeling exercises are critical in addressing any deficiencies associated with the demonstration of an integrated biofuels and value-added products production process at pilot scale as well as demonstration on the commercialization scale.




Sulfur Biogeochemistry


Book Description




Processes in Microbial Ecology


Book Description

Microbial ecology is the study of interactions among microbes in natural environments and their roles in biogeochemical cycles, food web dynamics, and the evolution of life. Microbes are the most numerous organisms in the biosphere and mediate many critical reactions in elemental cycles and biogeochemical reactions. Because microbes are essential players in the carbon cycle and related processes, microbial ecology is a vital science for understanding the role of the biosphere in global warming and the response of natural ecosystems to climate change. This novel textbook discusses the major processes carried out by viruses, bacteria, fungi, protozoa and other protists - the microbes - in freshwater, marine, and terrestrial ecosystems. It focuses on biogeochemical processes, starting with primary production and the initial fixation of carbon into cellular biomass, before exploring how that carbon is degraded in both oxygen-rich (oxic) and oxygen-deficient (anoxic) environments. These biogeochemical processes are affected by ecological interactions, including competition for limiting nutrients, viral lysis, and predation by various protists in soils and aquatic habitats. The book neatly connects processes occurring at the micron scale to events happening at the global scale, including the carbon cycle and its connection to climate change issues. A final chapter is devoted to symbiosis and other relationships between microbes and larger organisms. Microbes have huge impacts not only on biogeochemical cycles, but also on the ecology and evolution of more complex forms of life, including Homo sapiens..




Sulfate-Reducing Bacteria and Archaea


Book Description

The abundance of sulfate-reducing bacteria and archaea (SRBA) is impressive and new isolates are being reported continuously. A few decades ago, only two genera of sulfate-reducing bacteria (SRB) had been identified. As of 2018, 92 genera containing more than 420 species of SRB have been isolated and characterized and there are several species of archaea. This book addresses the development of the research with SRBA and includes historical background of this field. Biochemical characterization of the enzymes, cytochromes and electron carriers involved with dissimilatory sulfate reduction are reviewed and the presence of relevant genes in cultured and uncultured SRBA are assessed using genome analysis. The contributions of transmembrane electron transport complexes as related to cell energetics are discussed. This book highlights the unique cellular and molecular features of the SRBA and discusses the biochemical interactions behind their metabolic capabilities which enable SRBA to grow in extreme environments. Examples are provided to detoxify and alleviate pollution situations, to evaluate mechanisms proposed for corrosion of ferrous metals and to examine the effects of SRB on human and animal hosts.