Neural Data Science


Book Description

A Primer with MATLAB® and PythonTM present important information on the emergence of the use of Python, a more general purpose option to MATLAB, the preferred computation language for scientific computing and analysis in neuroscience. This book addresses the snake in the room by providing a beginner's introduction to the principles of computation and data analysis in neuroscience, using both Python and MATLAB, giving readers the ability to transcend platform tribalism and enable coding versatility. - Includes discussions of both MATLAB and Python in parallel - Introduces the canonical data analysis cascade, standardizing the data analysis flow - Presents tactics that strategically, tactically, and algorithmically help improve the organization of code




Analysis of Neural Data


Book Description

Continual improvements in data collection and processing have had a huge impact on brain research, producing data sets that are often large and complicated. By emphasizing a few fundamental principles, and a handful of ubiquitous techniques, Analysis of Neural Data provides a unified treatment of analytical methods that have become essential for contemporary researchers. Throughout the book ideas are illustrated with more than 100 examples drawn from the literature, ranging from electrophysiology, to neuroimaging, to behavior. By demonstrating the commonality among various statistical approaches the authors provide the crucial tools for gaining knowledge from diverse types of data. Aimed at experimentalists with only high-school level mathematics, as well as computationally-oriented neuroscientists who have limited familiarity with statistics, Analysis of Neural Data serves as both a self-contained introduction and a reference work.




Case Studies in Neural Data Analysis


Book Description

A practical guide to neural data analysis techniques that presents sample datasets and hands-on methods for analyzing the data. As neural data becomes increasingly complex, neuroscientists now require skills in computer programming, statistics, and data analysis. This book teaches practical neural data analysis techniques by presenting example datasets and developing techniques and tools for analyzing them. Each chapter begins with a specific example of neural data, which motivates mathematical and statistical analysis methods that are then applied to the data. This practical, hands-on approach is unique among data analysis textbooks and guides, and equips the reader with the tools necessary for real-world neural data analysis. The book begins with an introduction to MATLAB, the most common programming platform in neuroscience, which is used in the book. (Readers familiar with MATLAB can skip this chapter and might decide to focus on data type or method type.) The book goes on to cover neural field data and spike train data, spectral analysis, generalized linear models, coherence, and cross-frequency coupling. Each chapter offers a stand-alone case study that can be used separately as part of a targeted investigation. The book includes some mathematical discussion but does not focus on mathematical or statistical theory, emphasizing the practical instead. References are included for readers who want to explore the theoretical more deeply. The data and accompanying MATLAB code are freely available on the authors' website. The book can be used for upper-level undergraduate or graduate courses or as a professional reference. A version of this textbook with all of the examples in Python is available on the MIT Press website.




Data-Driven Science and Engineering


Book Description

A textbook covering data-science and machine learning methods for modelling and control in engineering and science, with Python and MATLAB®.




Data-Driven Computational Neuroscience


Book Description

Trains researchers and graduate students in state-of-the-art statistical and machine learning methods to build models with real-world data.




Data Science from Scratch


Book Description

Data science libraries, frameworks, modules, and toolkits are great for doing data science, but they’re also a good way to dive into the discipline without actually understanding data science. In this book, you’ll learn how many of the most fundamental data science tools and algorithms work by implementing them from scratch. If you have an aptitude for mathematics and some programming skills, author Joel Grus will help you get comfortable with the math and statistics at the core of data science, and with hacking skills you need to get started as a data scientist. Today’s messy glut of data holds answers to questions no one’s even thought to ask. This book provides you with the know-how to dig those answers out. Get a crash course in Python Learn the basics of linear algebra, statistics, and probability—and understand how and when they're used in data science Collect, explore, clean, munge, and manipulate data Dive into the fundamentals of machine learning Implement models such as k-nearest Neighbors, Naive Bayes, linear and logistic regression, decision trees, neural networks, and clustering Explore recommender systems, natural language processing, network analysis, MapReduce, and databases




MATLAB for Neuroscientists


Book Description

MATLAB for Neuroscientists serves as the only complete study manual and teaching resource for MATLAB, the globally accepted standard for scientific computing, in the neurosciences and psychology. This unique introduction can be used to learn the entire empirical and experimental process (including stimulus generation, experimental control, data collection, data analysis, modeling, and more), and the 2nd Edition continues to ensure that a wide variety of computational problems can be addressed in a single programming environment. This updated edition features additional material on the creation of visual stimuli, advanced psychophysics, analysis of LFP data, choice probabilities, synchrony, and advanced spectral analysis. Users at a variety of levels—advanced undergraduates, beginning graduate students, and researchers looking to modernize their skills—will learn to design and implement their own analytical tools, and gain the fluency required to meet the computational needs of neuroscience practitioners. - The first complete volume on MATLAB focusing on neuroscience and psychology applications - Problem-based approach with many examples from neuroscience and cognitive psychology using real data - Illustrated in full color throughout - Careful tutorial approach, by authors who are award-winning educators with strong teaching experience




Beginning Mathematica and Wolfram for Data Science


Book Description

Enhance your data science programming and analysis with the Wolfram programming language and Mathematica, an applied mathematical tools suite. The book introduces you to the Wolfram programming language and its syntax, as well as the structure of Mathematica and its advantages and disadvantages. You’ll see how to use the Wolfram language for data science from a theoretical and practical perspective. Learning this language makes your data science code better because it is very intuitive and comes with pre-existing functions that can provide a welcoming experience for those who use other programming languages. You’ll cover how to use Mathematica where data management and mathematical computations are needed. Along the way you’ll appreciate how Mathematica provides a complete integrated platform: it has a mixed syntax as a result of its symbolic and numerical calculations allowing it to carry out various processes without superfluous lines of code. You’ll learn to use its notebooks as a standard format, which also serves to create detailed reports of the processes carried out. What You Will Learn Use Mathematica to explore data and describe the concepts using Wolfram language commands Create datasets, work with data frames, and create tables Import, export, analyze, and visualize data Work with the Wolfram data repository Build reports on the analysis Use Mathematica for machine learning, with different algorithms, including linear, multiple, and logistic regression; decision trees; and data clustering The fundamentals of the Wolfram Neural Network Framework and how to build your neural network for different tasks How to use pre-trained models from the Wolfram Neural Net Repository Who This Book Is For Data scientists new to using Wolfram and Mathematica as a language/tool to program in. Programmers should have some prior programming experience, but can be new to the Wolfram language.




Neuronal Dynamics


Book Description

This solid introduction uses the principles of physics and the tools of mathematics to approach fundamental questions of neuroscience.




Data Science and Machine Learning


Book Description

Focuses on mathematical understanding Presentation is self-contained, accessible, and comprehensive Full color throughout Extensive list of exercises and worked-out examples Many concrete algorithms with actual code