New Mechanisms Involved in the DNA Replication Stress Response of Non-transformed Human Cells


Book Description

The cell cycle, the group of processes involved in the duplication and division of a cell in two daughter cells is essential for all organism existence. The correct regulation of these processes is crucial to guarantee genome integrity and cell survival. From the different cell cycle phases, the S phase is the most vulnerable to the acquisition of DNA damage since it is the phase in which the DNA is replicated. Alterations in DNA replication dynamics result in the accumulation of replication stress, one of the major sources of genomic instability, a hallmark of cancer. In this sense, cells have developed complex surveillance mechanisms to ensure stabilization and repair of forks, to coordinate these functions with cell cycle, and thus, to prevent cell division in the presence of unreplicated or damaged DNA. By doing so, these mechanisms will try to overcome the damage, and if so, the DNA replication stress response will promote replication resumption. By contrast, in the cases of persistent damage, cells are withdrawal from the cell cycle either by apoptosis or senescence. The correct activation and regulation of all these mechanisms is essential to prevent the acquisition of genomic instability and the oncogenic transformation. The pathways involved in DNA damage detection and signaling have been extensively studied in tumor cells. However, the response to replication stress, especially in non-transformed human cells, is still poorly understood. Therefore, in order to gain a better understanding of the pathways involved in this response, the main objective of this thesis has been to study and characterize new mechanisms involved in the DNA replication stress response of non-transformed human cells, as well as to analyze their contribution towards safeguarding genome integrity. Combining cellular and molecular approaches, together with several replication stress inducing agents, we have characterized new DNA replication stress response mechanisms that prevent replication resumption upon severe replication stress. For instance, we have described that APC/CCdh1 ubiquitin ligase is prematurely activated in S phase, to prevent new origin firing, in response to a prolonged DNA replication inhibition that results in the processing of replication forks into double strand breaks. Additionally, using an approach that has allowed us to define the changes at replication fork level between an acute and prolonged replication stress, we have seen that replication forks suffer several remodeling and processing events that abrogate their ability to restart after severe replication stress. Notably, our results suggest that this loss in the ability to resume replication under these conditions may act as a mechanism to safeguard genome integrity in non-transformed human cells. Collectively, the results of this thesis contribute to have a better understanding of the mechanisms involved in the DNA replication stress response of non-transformed human cells, opening new doors for the development of future therapies.




Replication Stress


Book Description

"This thesis investigates the mechanisms that are activated in response to replication stress induced with hydroxyurea, an agent that causes deoxyribonucleotides depletion and arrest cells in S phase, in the non-transformed hTERT-RPE cells. The results obtained in the non- transformed cells are compared with the ones obtained with HCT116 colorectal cancer cells.Previous results indicated that, in response to an acute replication stress in hTERT-RPE, replication forks were able to restart without generating genomic instability, while in response to severe replication stress APC/CCdh1 was activated in S phase, which prevented the reinitiation of replication due to the inactivation of new origins.In this thesis we verified that, in response to an acute replication stress in hTERT-RPE cells, replication forks undergo fork remodelling, although CMG complexes maintain their integrity and can be reused to restart replication once replication stress is eliminated.In response to a prolonged replication stress, the lack of APC/CCdh1 activation in S phase in HCT116 tumour cells allows the resumption of replication by the activation of new origins, despite the acquisition of genomic instability during this process.The role of some proteins, RAD51 and OZF, in replication fork progression or restart during replication stress conditions is also examined. During a mild replication stress, RAD51 and OZF are important for replication fork progression in hTERT-RPE cells. At the same time, they are necessary for the correct progression of replication forks in HCT116 cells, which present a higher basal replication stress, even under unperturbed conditions. In response to an acute replication stress, RAD51 is also important for an efficient replication fork restart and progression in hTERT-RPE cells.Understanding the mechanisms that are working on non-transformed cells in replication stress, and comparing them with tumour cells, can help us to understand the alterations that tumour cells have acquired in order to bypass these regulations and to discover new molecules relevant to deal with replication stress." -- TDX.




Holland-Frei Cancer Medicine


Book Description

Holland-Frei Cancer Medicine, Ninth Edition, offers a balanced view of the most current knowledge of cancer science and clinical oncology practice. This all-new edition is the consummate reference source for medical oncologists, radiation oncologists, internists, surgical oncologists, and others who treat cancer patients. A translational perspective throughout, integrating cancer biology with cancer management providing an in depth understanding of the disease An emphasis on multidisciplinary, research-driven patient care to improve outcomes and optimal use of all appropriate therapies Cutting-edge coverage of personalized cancer care, including molecular diagnostics and therapeutics Concise, readable, clinically relevant text with algorithms, guidelines and insight into the use of both conventional and novel drugs Includes free access to the Wiley Digital Edition providing search across the book, the full reference list with web links, illustrations and photographs, and post-publication updates




Systems Biology of Cancer


Book Description

An overview of the current systems biology-based knowledge and the experimental approaches for deciphering the biological basis of cancer.




Epigenetic Mechanisms of Gene Regulation


Book Description

Many inheritable changes in gene function are not explained by changes in the DNA sequence. Such epigenetic mechanisms are known to influence gene function in most complex organisms and include effects such as transposon function, chromosome imprinting, yeast mating type switching and telomeric silencing. In recent years, epigenetic effects have become a major focus of research activity. This monograph, edited by three well-known biologists from different specialties, is the first to review and synthesize what is known about these effects across all species, particularly from a molecular perspective, and will be of interest to everyone in the fields of molecular biology and genetics.




Telomeres and Telomerase


Book Description

Telomeres are essential functional elements of eukaryotic chromosomes. Their fundamental biological role as protectors of chromosome stability was identified for the first time in the 1930s by Hermann Muller and Barbara McClintock based on pioneering cytological experiments. Modern molecular research carried out more recently revealed that telomeres and telomerase play important roles in processes such as carcinogenesis and cellular senescence. This special issue presents the most recent developments in this highly active field of research. It is becoming increasingly clear that molecular pathways involved in regulation of telomere length and structure are functionally linked with pathways involved in DNA damage response, cellular stress response, chromatin organization and perhaps even pathways that regulate evolutionary chromosome rearrangements. The above functional link is explored by the leading experts in the field of telomere biology. Cell biologists, molecular biologists, oncologists, gerontologists, and radiobiologists with an interest in the role of telomeres/telomerase will appreciate the up-to-date information in this publication.




DNA Repair in Cancer Therapy


Book Description

DNA Repair and Cancer Therapy: Molecular Targets and Clinical Applications, Second Edition provides a comprehensive and timely reference that focuses on the translational and clinical use of DNA repair as a target area for the development of diagnostic biomarkers and the enhancement of cancer treatment. Experts on DNA repair proteins from all areas of cancer biology research take readers from bench research to new therapeutic approaches. This book provides a detailed discussion of combination therapies, in other words, how the inhibition of repair pathways can be coupled with chemotherapy, radiation, or DNA damaging drugs. Newer areas in this edition include the role of DNA repair in chemotherapy induced peripheral neuropathy, radiation DNA damage, Fanconi anemia cross-link repair, translesion DNA polymerases, BRCA1-BRCA2 pathway for HR and synthetic lethality, and mechanisms of resistance to clinical PARP inhibitors. - Provides a comprehensive overview of the basic and translational research in DNA repair as a cancer therapeutic target - Includes timely updates from the earlier edition, including Fanconi Anemia cross-link repair, translesion DNA polymerases, chemotherapy induced peripheral neuropathy, and many other new areas within DNA repair and cancer therapy - Saves academic, medical, and pharma researchers time by allowing them to quickly access the very latest details on DNA repair and cancer therapy - Assists researchers and research clinicians in understanding the importance of the breakthroughs that are contributing to advances in disease-specific research




DNA Replication and Human Disease


Book Description

At least 5 trillion cell divisions are required for a fertilized egg to develop into an adult human, resulting in the production of more than 20 trillion meters of DNA! And yet, with only two exceptions, the genome is replicated once and only once each time a cell divides. How is this feat accomplished? What happens when errors occur? This book addresses these questions by presenting a thorough analysis of the molecular events that govern DNA replication in eukaryotic cells. The association between genome replication and cell proliferation, disease pathogenesis, and the development of targeted therapeutics is also addressed. At least 160 proteins are involved in replicating the human genome, and at least 40 diseases are caused by aberrant DNA replication, 35 by mutations in genes required for DNA replication or repair, 7 by mutations generated during mitochondrial DNA replication, and more than 40 by DNA viruses. Consequently, a growing number of therapeutic drugs are targeted to DNA replication proteins. This authoritative volume provides a rich source of information for researchers, physicians, and teachers, and will stimulate thinking about the relevance of DNA replication to human disease.




Mechanisms of Carcinogenesis


Book Description

but also the possibility of intervention in specific stages. In Human behavior, including stress and other factors, plays an important role in neoplasia, although too little is known addition, variables which affect cancer development as well on the reasons for such development. Carcinogens, which as some endogenous factors can be better delineated help initiate the neoplastic process, may be either synthetic through such investigations. The topics of this volume encompass premalignant non or naturally-occurring. Cancer causation may be ascribed to invasive lesions, species-specific aspects of carcinogenicity, certain chemicals, physical agents, radioactive materials, viruses, parasites, the genetic make-up of the organism, and radiation, viruses, a quantum theory of carinogenesis, onco bacteria. Humans, eumetazoan animals and vascular plants genes, and selected environmental carcinogens. are susceptible to the first six groups of cancer causes, whe reas the last group, bacteria, seems to affect only vascular plants. Neoplastic development may begin with impairment ofJmdy defenses by a toxic material (carcinogen) which acts as an initiator, followed by promotion and progression to an overt neoplastic state. Investigation of these processes Series Editor Volume Editor allows not only a better insight into the mechanism of action Hans E. Kaiser Elizabeth K. Weisburger vii ACKNOWLEDGEMENT Inspiration and encouragement for this wide ranging project on cancer distribution and dissemination from a comparative biological and clinical point of view, was given by my late friend E. H. Krokowski.




Mechanisms of DNA Recombination and Genome Rearrangements: Methods to Study Homologous Recombination


Book Description

Mechanisms of DNA Recombination and Genome Rearrangements: Methods to Study Homologous Recombination, Volume 600, the latest release in the Methods in Enzymology series, continues the legacy of this premier serial with quality chapters authored by leaders in the field. Homologous genetic recombination remains the most enigmatic process in DNA metabolism. The molecular machines of recombination preserve the integrity of the genetic material in all organisms and generate genetic diversity in evolution. The same molecular machines that support genetic integrity by orchestrating accurate repair of the most deleterious DNA lesions, however, also promote survival of cancerous cells and emergence of radiation and chemotherapy resistance. This two-volume set offers a comprehensive set of cutting edge methods to study various aspects of homologous recombination and cellular processes that utilize the enzymatic machinery of recombination The chapters are written by the leading researches and cover a broad range of topics from the basic molecular mechanisms of recombinational proteins and enzymes to emerging cellular techniques and drug discovery efforts. Contributions by the leading experts in the field of DNA repair, recombination, replication and genome stability Documents cutting edge methods