High-valent Oxygen Intermediates of Mononuclear Non-heme Iron Enzymes


Book Description

Mononuclear non-heme iron (NHFe) enzymes catalyze a wide variety of biologically-important reactions such as hydroxylation, halogenation, desaturation, ring closure, and electrophilic aromatic substitution. The key intermediate in the catalytic cycle is the S = 2 Fe(IV)=O species, capable of abstracting an H-atom from inert C--H bonds as strong as 106 kcal/mol. The Fe(IV)=O intermediate in enzymes is transient and difficult to trap; as such, stable synthetic analogs have proven invaluable for spectroscopic elucidation of the geometric/electronic structure of the Fe(IV)=O unit and how it is activated for reactivity. Such biomimetic Fe(IV)=O model complexes can be either intermediate-spin (S = 1) or high-spin (S = 2) in contrast to the S = 2 ground state of enzyme intermediates. For an S = 1 Fe(IV)=O species, the Fe--oxo [beta] [pi]*-frontier molecular orbital (FMO) [from the combination of Fe d(xz/yz) and oxo p(x/y)] is involved in H-atom abstraction, and this FMO requires a side-on approach ([pi]-attack) to achieve maximum overlap with the substrate C--H bond. Through magnetic circular dichroism (MCD) and nuclear vibrational resonance spectroscopy (NRVS) studies, the reactivity of the S = 1 Fe(IV)=O unit has been shown to be affected by the oxo contribution in the [pi]*-FMO, where a larger oxo contribution results in greater orbital overlap (with the substrate C--H) and higher reactivity; also, the [pi]-attack pathway results in steric clashes between substrate and ligand, giving a significant steric contribution to the energy of the reaction barrier. For an S = 2 Fe(IV)=O species, the Fe--oxo [alpha] [sigma]*-FMO [Fe d(z2) and oxo p(z)] is spin-polarized (exchange-stabilized) to an energy level comparable with its [pi]*-FMO, making it accessible as a second pathway ([sigma]-attack) for reactivity. In the S = 2 Fe(IV)=O model complex ligated by TMG3tren, this [sigma]*-FMO is active but is axially hindered by the ligand, again giving a large steric contribution to the reaction barrier; however, the intrinsic electronic reaction barriers of the S = 2 [sigma]*-FMO and the S = 1 [pi]*-FMO are comparable, suggesting they are similarly active in H-atom abstraction. Furthermore, MCD excited-state spectroscopy in combination with multiconfigurational calculations on the S = 2 model reveal two different [pi]-pathways for reactivity involving Fe(III)--oxyl[p(x), [pi]] character, in addition to the [sigma]-pathway involving Fe(III)--oxyl[p(z), [sigma]] character, showing that the S = 2 Fe(IV)=O unit is activated for both [pi] and [sigma] H-atom abstraction reactivities. Finally, the S = 2 enzyme intermediate for the halogenase SyrB2 was trapped and structurally characterized by NRVS, revealing two possible 5-coordinate trigonal bipyramidal candidates with the Fe--oxo vector oriented either perpendicular or parallel to the substrate C--H bond. Importantly, this difference in orientation leads to Fe(III)--OH products oriented efficiently for different rebound reactivities -- native halogenation in the case of perpendicular orientation and non-native hydroxylation in the case of parallel orientation.




Iron-containing Enzymes


Book Description

Mononuclear iron containing enzymes are important intermediates in bioprocesses and have potential in the industrial biosynthesis of specific products. This book features topical review chapters by leaders in this field and its various sub-disciplines.







Oxygen Activation by Mononuclear Non-heme Iron Enzymes


Book Description

Non-heme iron (NHFe) enzymes are in critical in Nature, playing significant roles in bioremediation, the biosynthesis of natural products, DNA repair and human health. These metalloenzymes utilize an Fe cofactor to activate dioxygen for reaction with organic substrates in a wide variety of chemical transformations including: H-atom abstraction, hydroxylation, halogentation, aromatic ring cleavage, aliphatic ring expansion/formation, electrophilic aromatic substitution and sulfur oxygenation/oxidation. Elucidating the mechanisms of these diverse catalysts requires defining the geometric and electronic structure of key Fe-O2 intermediates along the reaction cycle. An ideal tool for the interrogation of these Fe-O2 intermediates is nuclear resonance vibrational spectroscopy (NRVS), a synchrotron-based technique that observes the vibrational side-bands of the Fe-57 Mossbauer transition, making it a site-selective probe of all normal modes containing Fe displacement. Interpretation and analysis of NRVS spectra by correlation to quantum mechanical simulations (via density functional theory), allows for assignment of Fe vibrations and crucially geometric structure. In this thesis, NRVS is applied to the Fe-O2 intermediates in the extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase (HPCD-HPCA-Int-1) and the intradiol dioxygenase, protocatechuate 3,4-dioxygenase (PCD-4FC-Int-1), the pre-Fe(IV)=O intermediate in the pterin-dependent hydroxylase, tryptophan hydroxylase, and intermediate Q in methane monooxygenase (included in the appendix), while the ETHE1 sulfur oxidase versus oxygenase and the alpha-KG-dependent DAOCS concerted versus sequential DAOCS mechanistic studies utilize a combination of spectroscopic methods.




Activation of Dioxygen by a Mononuclear Nonheme Iron Complex Via Sequential Peroxo, Oxo, and Hydroxo Intermediates


Book Description

The activation of dioxygen by nonheme iron centers is of fundamental importance to biological and synthetic oxidation reactivity. Dioxygen activation by nonheme iron is often proposed to follow a sequence of steps involving initial O2 binding, reduction of O2 to form a peroxo species, and Ou2013O bond cleavage to produce a reactive high-valent FeIV(O) intermediate. Individual intermediates involved in these steps have been observed in both synthetic and enzymatic systems; however, the observation of multiple, sequentially formed Fe/oxygen intermediates is extremely rare. This presentation will discuss the reactivity of a dithiolate-ligated nonheme iron complex, FeII(Me3TACN)(S2SiMe2), with dioxygen to produce a peroxo(diiron) species, FeIII2(O2)(Me3TACN)2(S2SiMe2)2, which was characterized by UV-vis, Mu00f6ssbauer, resonance Raman (RR), and X-ray absorption spectroscopies. This peroxo(diiron) complex undergoes photochemically or thermally induced Ou2013O bond cleavage to generate an FeIV(O) complex, FeIV(O)(Me3TACN)(S2SiMe2), exhibiting a highly activated FeIV=O bond, as seen by RR and X-ray absorption spectroscopy. The FeIV(O) reacts with H-atom donors to produce an FeIII(OH) complex, FeIII(OH)(Me3TACN)(S2SiMe2), which could also be synthesized independently by addition of a one-electron oxidant followed by a hydroxide source to the FeII complex. The generation, stability, and spectroscopic characterization of each of these species will be discussed.




Molecular Catalysts


Book Description

Highlighting the key aspects and latest advances in the rapidly developing field of molecular catalysis, this book covers new strategies to investigate reaction mechanisms, the enhancement of the catalysts' selectivity and efficiency, as well as the rational design of well-defined molecular catalysts. The interdisciplinary author team with an excellent reputation within the community discusses experimental and theoretical studies, along with examples of improved catalysts, and their application in organic synthesis, biocatalysis, and supported organometallic catalysis. As a result, readers will gain a deeper understanding of the catalytic transformations, allowing them to adapt the knowledge to their own investigations. With its ideal combination of fundamental and applied research, this is an essential reference for researchers and graduate students both in academic institutions and in the chemical industry. With a foreword by Nobel laureate Roald Hoffmann.




Mononuclear Non-heme Iron Dependent Enzymes Part B


Book Description

Mononuclear Non-heme Iron Dependent Enzymes, Volume 703 PART B focuses on methods for studying, characterizing, and leveraging the chemistry of mononuclear non-heme iron dependent enzymes. Chapters in this new release include Photoreduction for Rieske oxygenase chemistry, Insights into the Mechanisms of Rieske Oxygenases from Studying the Unproductive Activation of Dioxygen, Non-heme iron and 2-oxoglutarate enzymes catalyze cyclopropane and azacyclopropane formations, Obtaining precise metrics of substrate positioning in Fe(II)/2OG dependent enzymes using Hyperfine Sublevel Correlation Spectroscopy, Xe-pressurization studies for revealing substrate-entrance tunnels, and much more.Additional chapters cover A tale of two dehydrogenases involved in NADH recycling, Rieske oxygenases and/or their partner reductase proteins, Expression, assay and inhibition of 9-cis-epoxycarotenoid dioxygenase (NCED) from Solanum lycopersicum and Zea mays, Biocatalysis and non-heme iron enzymes, In vitro analysis of the three-component Rieske oxygenase cumene dioxygenase from Pseudomonas fluorescens IP01, Structure and function of carbazole 1,9a-dioxygenase, Characterization of a Mononuclear Nonheme Iron-dependent Mono-oxygenase OzmD in Oxazinomycin Biosynthesis, and much more. - Provides detailed articles regarding how to study the structures and mechanisms of mononuclear non-heme iron dependent enzymes - Guides readers on how to use partner proteins in non-heme iron enzyme catalysis - Includes strategies to employ mononuclear non-heme iron enzymes in biocatalytic applications




Advances in Biological Science Research


Book Description

Advances in Biological Science Research: A Practical Approach provides discussions on diverse research topics and methods in the biological sciences in a single platform. This book provides the latest technologies, advanced methods, and untapped research areas involved in diverse fields of biological science research such as bioinformatics, proteomics, microbiology, medicinal chemistry, and marine science. Each chapter is written by renowned researchers in their respective fields of biosciences and includes future advancements in life science research. - Discusses various research topics and methods in the biological sciences in a single platform - Comprises the latest updates in advanced research techniques, protocols, and methods in biological sciences - Incorporates the fundamentals, advanced instruments, and applications of life science experiments - Offers troubleshooting for many common problems faced while performing research experiments




Physical Inorganic Chemistry


Book Description

This go-to text provides information and insight into physical inorganic chemistry essential to our understanding of chemical reactions on the molecular level. One of the only books in the field of inorganic physical chemistry with an emphasis on mechanisms, it features contributors at the forefront of research in their particular fields. This essential text discusses the latest developments in a number of topics currently among the most debated and researched in the world of chemistry, related to the future of solar energy, hydrogen energy, biorenewables, catalysis, environment, atmosphere, and human health.