PHO13 Phosphoglycolate Phosphatase from Saccharomyces Cerevisiae (baker's Yeast), a Member of the P-nitrophenylphosphatase Family of the Haloalkanoic Acid Dehalogenase (HAD) Superfamily


Book Description

"The function of phosphoglycolate phosphatase (PGPase) in photosynthetic organisms such as green algae (Chlamydomonas reinhardti) is to recycle the 2-phosphoglycolate that is formed as a by-product of the Calvin cycle. The role of PGPase in nonphotosynthetic organisms is less understood, but one potential role that has been suggested is to remove the 2-phosphoglycolate that is formed as a result of DNA repair. This may be the biological role of PHO13 PGPase in Saccharomyces cerevisiae as well. PHO13 PGPase from S. cerevisiae is a member of the PGPase subfamily within the p-nitrophenylphosphatase (p-NPPase) family, which is within the Haloalkanoic Acid Dehalogenase (HAD) superfamily. PHO13 has been subcloned into pET19b to create PHO13(His·Tag). PHO13(HT) was overexpressed and found to be soluble. It purified well by Ni2+-NTA affinity chromatography followed by size-exclusion chromatography. Its expression, solubility, and activity appeared comparable to the native PHO13, but PHO13(HT) was easier to purify due to the histidine tag. Both enzymes had comparable specific activities for both p-nitrophenylphosphate (p-NPP) and 2-phosphoglycolate (PG), pH optima around pH 8.0, optimal activity with >/= 7 mM Mg2+, activity with Co2+ and Mn2+, negligible activity in the presence of Zn2+, and no activity for Ca2+. PHO13(HT) is now ready for x-ray crystal structure determination with our collaborator, Joseph Wedekind, at the University of Rochester."--Abstract.




Discovery, Cloning, Expression, Purification, and Characterization of Phosphoglycolate Phosphatase from Staphylococcus Aureus


Book Description

"Staphylococcus aureus is a major cause of hospital-acquired infections. The multi-drug resistant nature of certain S. aureus strains makes the discovery of new drug targets for S. aureus vital. A newly discovered virulence factor from S. aureus was described as an ortholog of NagD from E. coli, a member of the nitrophenyl phosphatase family of the HAD (Haloacid Dehalogenase) superfamily. This thesis will show that this virulence factor is not an ortholog of NagD UMPase from E. coli, but rather a phosphoglycolate phosphatase (PGPase). If phosphoglycolate accumulates in the cell, it will inhibit the glycolytic enzyme triose phosphate isomerase (TPI). In S. aureus, TPI also serves as an adhesion protein that can bind to host cells; phosphoglycolate would interfere with this adhesion process and thus make it harder for S. aureus to infect host cells. Thus, this S. aureus PGPase may act as a virulence factor by degrading the TPI inhibitor phosphoglycolate. We cloned the gene, expressed and purified the protein, and determined and characterized its activity. We have subcloned this PGPase into a His·Tag vector, purified the protein using nickel affinity and size exclusion chromatography, and characterized enzymatic activity, optimal conditions (substrate, pH, and metal usage), and kinetics."--Abstract.







Class 3.1 Hydrolases V


Book Description

The Springer Handbook of Enzymes provides concise data on some 5,000 enzymes sufficiently well characterized – and here is the second, updated edition. Their application in analytical, synthetic and biotechnology processes as well as in food industry, and for medicinal treatments is added. Data sheets are arranged in their EC-Number sequence. The new edition reflects considerable progress in enzymology: the total material has more than doubled, and the complete 2nd edition consists of 39 volumes plus Synonym Index. Starting in 2009, all newly classified enzymes are treated in Supplement Volumes.




Algal Physiology and Biochemistry


Book Description




Enzyme Kinetics and Mechanism, Part F: Detection and Characterization of Enzyme Reaction Intermediates


Book Description

The critically acclaimed laboratory standard for more than forty years, Methods in Enzymology is one of the most highly respected publications in the field of biochemistry. Since 1955, each volume has been eagerly awaited, frequently consulted, and praised by researchers and reviewers alike. Now with more than 300 volumes (all of them still in print), the series contains much material still relevant today—truly an essential publication for researchers in all fields of life sciences. Spectroscopic Detection of Reaction Intermediates Isotopic and Kenetic Detection of Reaction Intermediates Chemical Trapping and Inhibitor Methods for Detecting Reaction Intermediates