Photon Echo Studies on Coherence Dynamics in the Photosynthetic Bacterial Reaction Center


Book Description

Photosynthetic light harvesting begins with collecting ambient photons via excitation of pigment molecules. The sophisticated design of the pigment-protein complexes is based on the cooperative network among structural motifs of pigment molecules and amino acid residues in proteins to achieve the remarkable efficiency and speed in light harvesting. The insight from nature's photosynthetic nano-machinery can be translated to an optimal material design. The principle behind such inherent excitation energy transfer dynamics were revealed with the advance of the femtosecond laser technique. One of the examples is the quantum mechanical coherence excitation energy transfer observed by nonlinear photon echo technique. This dissertation presents the investigation of the bacterial reaction center complexes using electronic coherence photon echo spectroscopy. The study focused on elucidating the origin of the coherence signals and identifying quantum mechanical components relevant to the excitation energy transfer. Experimental variables affecting the coherence signals were explored for the excitation energy transfer of photosynthetic bacterial reaction center. The result showed that the vibrational coherence mimics the behavior of the electronic coherence, and the lifetime is near 2 ps. A mutant bacterial reaction center was also examined to confirm the vibrational contribution. A new polarization control experiment indicates that majority of the observed vibrational coherence is from the electronic ground state.




Two-color Three-pulse Photon Echo Studies on the Photosynthetic Bacterial Reaction Center


Book Description

Photosynthesis begins with absorbing the sun light by the light harvesting complexes. The solar energy is then funneled into the reaction center (RC) via the energy transfer between the light harvesting complexes at ultrafast rates (̃1/100fs) with extremely high quantum efficiency (̃100 %). Most of the complexes are composed of pigments and protein matrices that tightly bind them. The pigments are responsible for absorbing and transferring the energy. The roles of the protein environment of photosynthetic pigment-protein complexes have been suggested, but the detailed mechanisms are still not fully understood. In this dissertation, non-linear spectroscopic methods using ultrashort pulses (̃ 40-fs FWHM), three-pulse photon echo studies are presented to investigate the roles of protein environment of the photosynthetic bacterial RC. The technique characterizes the protein dynamics around the pigments (a bacteriochlorophyll a, B and a bacteriopheophytin a, H) in the RC. In particular, two-color three-pulse electronic coherence photon echo technique is used to observe the quantum coherence between the excited states of coupled H and B, whose life time is sensitive to the protein dynamics. I found a long-lasting quantum coherence suggesting that the protein actively preserves the quantum coherence. A scenario in which the long-lasting coherence can accelerate the rate of energy trap is described with a simple Bloch model simulation. In addition, one- and two-color three-pulse photon echo peak shift (1C- and 2C3PEPS) techniques are used to measure the coupling strength between H and B in the wild type RC. The coupling strength is facilitated from the geometry between the pigments governed by the protein environment. The simulation based on the standard response function formalism is used to obtain the coupling strength. 2C3PEPS signal from H and B of the oxidized RC is reproduced to extract the coupling constant between them by quantum-master equation which efficiently incorporates pulse overlap effect and bath memory effect. The values will enable the molecular level of studies on the photosynthetic energy and electron transfer.




The Photosynthetic Bacterial Reaction Center


Book Description

This volume contains the contributions from the speakers at the NATO Advanced Research Workshop on "Structure of the Photosynthetic Bacterial Reaction Center X-ray Crystallography and Optical Spectroscopy with Polarized Light" which was held at the "Maison d'Hotes" of the Centre d'Etudes Nucleaires de Cadarache in the South of France, 20-25 September, 1987. This meeting continued in the spirit of a previous workshop which took place in Feldafing (FRG), March 1985. Photosynthetic reaction centers are intrinsic membrane proteins which, by performing a photoinduced transmembrane charge separation, are responsible for the conversion and storage of solar energy. Since the pioneering work of Reed and Clayton (1968) on the isolation of the reaction center from photosynthetic bacteria, optical spectroscopy with polarized light has been one of the main tools used to investigate the geometrical arrangement of the various chromophores in these systems. The recent elucidation by X-ray crystallography of the structure of several bacterial reaction centers, a breakthrough initiated by Michel and Deisenhofer, has provided us with the atomic coordinates of the pigments and some details about their interactions with neighboring aminoacid residues. This essential step has given a large impetus both to experimentalists and to theoreticians who are now attempting to relate the X-ray structural model to the optical properties of the reaction center and ultimately to its primary biological function.




The Photosynthetic Bacterial Reaction Center II


Book Description

The NATO Advanced Research Workshop entitled "The Photosynthetic Bacterial Reaction Center: Structure, Spectroscopy, and Dynamics" was held May 10-15, 1992, in the Maison d'H6tes of the Centre d'Etudes Nuc1eaires de Cadarache near Aix-en-Provence in the south of France. This workshop is the most recent of a string of meetings which started in Feldafing (Germany) in March 1985, soon after the three-dimensional structure of the bacterial reaction center had been elucidated by X-ray crystallography. This was followed, in September 1987, by a workshop in Cadarache and, in March 1990, by a second meeting in Feldafing. Although one of the most important processes on Earth, photosynthesis is still poorly understood. Stimulated by the breakthrough of solving the bacterial reaction center structure at atomic resolution, the field of relating this structure to the function of the reaction center, i. e. the remarkably efficient conversion and storage of solar energy, has been developing vigorously. Once the general organization of the cofactors and some details of the protein-cofactor interactions were known, it became possible to combine a variety of spectroscopic techniques with the powerful tool of site-directed mutagenesis in order to address increasingly incisive questions about the specific role of some amino acid residues in the electron transfer process. Still another promising tool is being developed, namely the exchange of a number of the native bacteriochlorophyll and bacteriopheophytin cofactors by chemically modified pigments.




The Reaction Center of Photosynthetic Bacteria


Book Description

Results of this third Feldafing Meeting can be considered as the harvest of novel techniques in spectroscopy, biochemistry and molecular biology to the bacterial photosynthetic reaction center. New information pertains to the crystallographic and electronic structure as well as to the dynamics of primary events and the role of the protein. The answer to one long-standing problem, the mechanism of primary charge separation, converges towards a sequential scheme, supported by femtosecond spectroscopy on reaction centers with selectively modified energetics.







Photosynthetic Reaction Center


Book Description

The availability of the photosynthetic reaction center's structure at an atomic resolution of less than three angstroms has revolutionized research. This protein is the first integral membrane protein whose structure has been determined with such precision. Each volume of the Photosynthetic Reaction Center contains original research, methods, and reviews. Together, these volumes cover our current understanding of how photosynthesis converts light energy into stored chemical energy. Volume II details the electron transfer process; it is oriented to the physical aspects of photosynthesis. It thus primarily discusses bacterial photosynthesis and model compounds. Volume II features the very complex and rapidly evolving issues associated with the theory of electron transfer in the bacterial reaction center, and explores picosecond and femtosecond spectroscopy. This volume also covers holeburning spectroscopy; primary events of bacterial photosynthesis with emphasis on the application of large, external electric fields designed to manipulate and probe mechanisms of the initial chemistry; the role of accessory carotenoid pigments; the techniques of infrared spectroscopy and magnetic resonance as applied to photosynthesis; and the interplay between natural and artificial photosynthesis.




The Purple Phototrophic Bacteria


Book Description

Here is a comprehensive survey of all aspects of these fascinating bacteria, metabolically the most versatile organisms on Earth. It compiles 48 chapters written by leading experts, who highlight the huge progress made in studies of these bacteria since 1995.




Light Harvesting in Photosynthesis


Book Description

This landmark collective work introduces the physical, chemical, and biological principles underlying photosynthesis: light absorption, excitation energy transfer, and charge separation. It begins with an introduction to properties of various pigments, and the pigment proteins in plant, algae, and bacterial systems. It addresses the underlying physics of light harvesting and key spectroscopic methods, including data analysis. It discusses assembly of the natural system, its energy transfer properties, and regulatory mechanisms. It also addresses light-harvesting in artificial systems and the impact of photosynthesis on our environment. The chapter authors are amongst the field’s world recognized experts. Chapters are divided into five main parts, the first focused on pigments, their properties and biosynthesis, and the second section looking at photosynthetic proteins, including light harvesting in higher plants, algae, cyanobacteria, and green bacteria. The third part turns to energy transfer and electron transport, discussing modeling approaches, quantum aspects, photoinduced electron transfer, and redox potential modulation, followed by a section on experimental spectroscopy in light harvesting research. The concluding final section includes chapters on artificial photosynthesis, with topics such as use of cyanobacteria and algae for sustainable energy production. Robert Croce is Head of the Biophysics Group and full professor in biophysics of photosynthesis/energy at Vrije Universiteit, Amsterdam. Rienk van Grondelle is full professor at Vrije Universiteit, Amsterdam. Herbert van Amerongen is full professor of biophysics in the Department of Agrotechnology and Food Sciences at Wageningen University, where he is also director of the MicroSpectroscopy Research Facility. Ivo van Stokkum is associate professor in the Department of Physics and Astronomy, Faculty of Sciences, at Vrije Universiteit, Amsterdam.




Comprehensive Nanoscience and Technology


Book Description

From the Introduction: Nanotechnology and its underpinning sciences are progressing with unprecedented rapidity. With technical advances in a variety of nanoscale fabrication and manipulation technologies, the whole topical area is maturing into a vibrant field that is generating new scientific research and a burgeoning range of commercial applications, with an annual market already at the trillion dollar threshold. The means of fabricating and controlling matter on the nanoscale afford striking and unprecedented opportunities to exploit a variety of exotic phenomena such as quantum, nanophotonic and nanoelectromechanical effects. Moreover, researchers are elucidating new perspectives on the electronic and optical properties of matter because of the way that nanoscale materials bridge the disparate theories describing molecules and bulk matter. Surface phenomena also gain a greatly increased significance; even the well-known link between chemical reactivity and surface-to-volume ratio becomes a major determinant of physical properties, when it operates over nanoscale dimensions. Against this background, this comprehensive work is designed to address the need for a dynamic, authoritative and readily accessible source of information, capturing the full breadth of the subject. Its six volumes, covering a broad spectrum of disciplines including material sciences, chemistry, physics and life sciences, have been written and edited by an outstanding team of international experts. Addressing an extensive, cross-disciplinary audience, each chapter aims to cover key developments in a scholarly, readable and critical style, providing an indispensible first point of entry to the literature for scientists and technologists from interdisciplinary fields. The work focuses on the major classes of nanomaterials in terms of their synthesis, structure and applications, reviewing nanomaterials and their respective technologies in well-structured and comprehensive articles with extensive cross-references. It has been a constant surprise and delight to have found, amongst the rapidly escalating number who work in nanoscience and technology, so many highly esteemed authors willing to contribute. Sharing our anticipation of a major addition to the literature, they have also captured the excitement of the field itself in each carefully crafted chapter. Along with our painstaking and meticulous volume editors, full credit for the success of this enterprise must go to these individuals, together with our thanks for (largely) adhering to the given deadlines. Lastly, we record our sincere thanks and appreciation for the skills and professionalism of the numerous Elsevier staff who have been involved in this project, notably Fiona Geraghty, Megan Palmer and Greg Harris, and especially Donna De Weerd-Wilson who has steered it through from its inception. We have greatly enjoyed working with them all, as we have with each other.