Phylogenetic Comparative Methods: A User's Guide for Paleontologists


Book Description

Recent advances in statistical approaches called phylogenetic comparative methods (PCMs) have provided paleontologists with a powerful set of analytical tools for investigating evolutionary tempo and mode in fossil lineages. However, attempts to integrate PCMs with fossil data often present workers with practical challenges or unfamiliar literature. This Element presents guides to the theory behind and the application of PCMs with fossil taxa. Based on an empirical dataset of Paleozoic crinoids, example analyses are presented to illustrate common applications of PCMs to fossil data, including investigating patterns of correlated trait evolution and macroevolutionary models of morphological change. The authors emphasize the importance of accounting for sources of uncertainty and discuss how to evaluate model fit and adequacy. Finally, the authors discuss several promising methods for modeling heterogeneous evolutionary dynamics with fossil phylogenies. Integrating phylogeny-based approaches with the fossil record provides a rigorous, quantitative perspective on understanding key patterns in the history of life.




Vertebrate Palaeontology


Book Description

All-new edition of the world’s leading vertebrate palaeontology textbook, now addressing key evolutionary transitions and ecological drivers for vertebrate evolution Richly illustrated with colour illustrations of the key species and cladograms of all major vertebrate taxa, Vertebrate Palaeontology provides a complete account of the evolution of vertebrates, including macroevolutionary trends and drivers that have shaped their organs and body plans, key transitions such as terrestrialization, endothermy, flight and impacts of mass extinctions on biodiversity and ecological drivers behind the origin of chordates and vertebrates, their limbs, jaws, feathers, and hairs. This revised and updated fifth edition features numerous recent examples of breakthrough discoveries in line with the current macroevolutionary approach in palaeontology research, such as the evolutionary drivers that have shaped vertebrate development. Didactical features have been enhanced and include new functional and developmental feature spreads, key questions, and extensive references to useful websites. Written by a leading academic in the field, Vertebrate Palaeontology discusses topics such as: Palaeozoic fishes, including Cambrian vertebrates, placoderms (‘armour-plated monsters’), Pan-Chondrichthyes such as sharks and rays, and Osteichthyes (‘bony fishes’) The first tetrapods, covering problems of life on land, diversity of Carboniferous tetrapods and temnospondyls and reptiliomorphs following the Carboniferous Mesozoic reptiles, such as Testudinata (turtles), Crocodylomorpha, Pterosauria, Dinosauria, great sea dragons and Lepidosauria (lizards and snakes) Mammals of the southern and northern hemispheres, covering Xenarthra (sloths, anteaters), Afrotheria (African mammals), Laurasiatheria (bats, ungulates, carnivores), and Euarchontoglires (rodents, primates) A highly comprehensive and completely up-to-date reference on vertebrate evolution, Vertebrate Palaeontology is an ideal learning aid for palaeontology courses in biology and geology departments. The text is also highly valuable to enthusiasts who want to experience the flavour of how modern research in the field is conducted.




Niche Evolution and Phylogenetic Community Paleoecology of Late Ordovician Crinoids


Book Description

Fossil crinoids are exceptionally suited to deep-time studies of community paleoecology and niche partitioning. By merging ecomorphological trait and phylogenetic data, this Element summarizes niche occupation and community paleoecology of crinoids from the Bromide fauna of Oklahoma (Sandbian, Upper Ordovician). Patterns of community structure and niche evolution are evaluated over a ~5 million-year period through comparison with the Brechin Lagerstätte (Katian, Upper Ordovician). The authors establish filtration fan density, food size selectivity, and body size as major axes defining niche differentiation, and niche occupation is strongly controlled by phylogeny. Ecological strategies were relatively static over the study interval at high taxonomic scales, but niche differentiation and specialization increased in most subclades. Changes in disparity and species richness indicate the transition between the early-middle Paleozoic Crinoid Evolutionary Faunas was already underway by the Katian due to ecological drivers and was not triggered by the Late Ordovician mass extinction.




Testing Character Evolution Models in Phylogenetic Paleobiology


Book Description

Macroevolutionary inference has historically been treated as a two-step process, involving the inference of a tree, and then inference of a macroevolutionary model using that tree. Newer models blend the two steps. These methods make more complete use of fossils than the previous generation of Bayesian phylogenetic models. They also involve many more parameters than prior models, including parameters about which empiricists may have little intuition. In this Element, we set forth a framework for fitting complex, hierarchical models. The authors ultimately fit and use a joint tree and diversification model to estimate a dated phylogeny of the Cincta (Echinodermata), a morphologically distinct group of Cambrian echinoderms that lack the fivefold radial symmetry characteristic of extant members of the phylum. Although the phylogeny of cinctans remains poorly supported in places, this Element shows how models of character change and diversification contribute to understanding patterns of phylogenetic relatedness and testing macroevolutionary hypotheses.




The Ecology of Biotic Interactions in Echinoids


Book Description

This Element reviews the ecologies of skeletal trace-producing interactions on echinoids in Modern ecosystems and the recognition of those biogenic traces in the fossil record. This title is also available as Open Access on Cambridge Core.




A Review of Blastozoan Echinoderm Respiratory Structures


Book Description

Echinoderms have evolved diverse and disparate morphologies throughout the Phanerozoic. Among them, blastozoans, an extinct group of echinoderms that were an important component of Paleozoic marine ecosystems, are primarily subdivided into groups based on the morphology of respiratory structures. However, systematic and phylogenetic research from the past few decades have shown that respiratory structures in blastozoans are not group-defining and they have re-evolved throughout echinoderm evolution. This Element provides a review of the research involving blastozoan respiratory structures, along with research concerning the morphology, paleoecology, and ontogeny of each of the major groupings of blastozoans as it relates to their corresponding respiratory structures. Areas of future research in these groups are also highlighted.




A Review and Evaluation of Homology Hypotheses in Echinoderm Paleobiology


Book Description

The extraxial-axial theory (EAT) and universal elemental homology (UEH) are often portrayed as mutually exclusive hypotheses of homology within pentaradiate Echinodermata. EAT describes homology upon the echinoderm bauplan, interpreted through early post-metamorphic growth and growth zones, dividing it into axial regions generally associated with elements of the ambulacral system and extraxial regions that are not. UEH describes the detailed construction of the axial skeleton, dividing it into homologous plates and plate series based on symmetry, early growth, and function. These hypotheses are not in conflict; the latter is rooted in refinement of the former. Some interpretive differences arise because many of the morphologies described from eleutherozoan development are difficult to reconcile with Paleozoic forms. Conversely, many elements described for Paleozoic taxa by UEH, such as the peristomial border plates, are absent in eleutherozoans. This Element recommends these two hypotheses be used together to generate a better understanding of homology across Echinodermata.




The Greatest Dinosaur Book Ever


Book Description

Get ready, young paleontologists! With over 1,000 jaw-dropping species, The Greatest Dinosaur Book Ever is your guide to all things prehistoric! Did you know some dinosaurs had feathers? Or that others had full body armor? From humongous herbivores to fearsome carnivores, this book covers everything you’ll ever need to know about dinosaurs. Examine surprising fossil evidence found around the world and discover each species’ adaptations and specializations. You’ll learn all about their attack and defense tools, including retractable claws, serrated teeth, clubbed tails, large horns, sharp spines, and more. Go beyond fan-favorites like the T-rex and the Triceratops and venture into the latest discoveries from the Triassic, Jurassic, and Cretaceous periods. Inside you’ll find: - Profiles on hundreds of dinosaur species covering anatomy, diet, habitat, cool features, and unique characteristics - A stunning gatefold and a large poster - Features on well-known paleontologists and their awesome finds - Other key finds and specimens in museums around the world This visual guide presents the most astounding species, including powerful predators with terrifying jaws and dinos that were only the size of chickens. From killer claws to camouflage, track these fascinating prehistoric species’ evolution through the dinosaur era with The Greatest Dinosaur Book Ever. Julius Csotonyi is one of the world's most high profile and talented contemporary scientific illustrators. Csotonyi has considerable academic expertise that contributes to his stunning dynamic art. He has created life-sized dinosaur murals for the Royal Ontario Museum and for the Dinosaur Hall at the Natural History Museum of Los Angeles County, and most of the artwork for the new Hall of Paleontology at the HMNS. He has illustrated the nonfiction children's book Prehistoric Predators, Dino World, Bug World, Shark World, Discovering Tigers, Discovering Reptiles, Discovering Bugs, Discovering Whales, and The T. Rex Handbook. He currently lives in Canada.




Paleontological Data Analysis


Book Description

PALEONTOLOGICAL DATA ANALYSIS An up-to-date edition of the indispensable guide to analysing paleontological data Paleontology has developed in recent decades into an increasingly data-driven discipline, which brings to bear a huge variety of statistical tools. Applying statistical methods to paleontological data requires a discipline-specific understanding of which methods and parameters are the most appropriate ones, and how to account for statistical bias inherent in the fossil record. By guiding the reader to these and other fundamental questions in the statistical analysis of fossilized specimens, Paleontological Data Analysis has become the standard text for anyone with an interest in quantitative analysis of the fossil record. Now fully updated to reflect the latest statistical methods and disciplinary advances, it is an essential tool for practitioners and students alike. Readers of the second edition of Paleontological Data Analysis readers will also find: New sections on machine learning, Bayesian inference, phylogenetic comparative methods, analysis of CT data, and much more New use cases and examples using PAST, R, and Python software packages Full color illustrations throughout Paleontological Data Analysis is ideal for paleontologists, evolutionary biologists, taxonomists, and students in any of these fields.




Handbook of Trait-Based Ecology


Book Description

Trait-based ecology is rapidly expanding. This comprehensive and accessible guide covers the main concepts and tools in functional ecology.