Principles and Models of Biological Transport


Book Description

Focus, Organization, and Content This book, like the first edition, deals with the mass transport processes that take place in living systems, with a focus on the normal behavior of eukaryotic cells and the - ganisms they constitute, in their normal physiological environment. As a consequence of this focus, the structure and content of the book differ from those of traditional transport texts. We do not start with the engineering principles of mass transport (which are well presented elsewhere) and then seek biological applications of these principles; rather, we begin with the biological processes themselves, and then - velop the models and analytical tools that are needed to describe them. This approach has several consequences. First of all, it drives the content of the text in a direction distinctively different from conventional transport texts. This is - cause the tools and models needed to describe complex biological processes are often different from those employed to describe more well-characterized inanimate systems. Many biological processes must still be described phenomenologically, using me- odologies like nonequilibrium thermodynamics. Simple electrical analogs employing a paucity of parameters can be more useful for characterization and prediction than complex theories based on the behavior of more well-defined systems on a laboratory bench. By allowing the biology to drive the choice of analysis tools and models, the latter are consistently presented in the context of real biological systems, and analysis and biology are interwoven throughout.




Principles and Models of Biological Transport


Book Description

This text is designed for a first course in biological mass transport, and the material in it is presented at a level that is appropriate to advanced undergraduates or early graduate level students. Its orientation is somewhat more physical and mathematical than a biology or standard physiology text, reflecting its origins in a transport course that I teach to undergraduate (and occasional graduate) biomedical engineering students in the Whiting School of Engineering at Johns Hopkins. The audience for my cours- and presumably for this text - also includes chemical engineering undergraduates concentrating in biotechnology, and graduate students in biophysics. The organization of this book differs from most texts that at tempt to present an engineering approach to biological transport. What distinguishes biological transport from other mass transfer processes is the fact that biological transport is biological. Thus, we do not start with the engineering principles of mass transport (which are well presented elsewhere) and then seek biological ap plications of these principles; rather, we begin with the biological processes themselves, and then develop the tools that are needed to describe them. As a result, more physiology is presented in this text than is often found in books dealing with engineering applica tions in the life sciences.




Transport Phenomena in Biological Systems


Book Description

For one-semester, advanced undergraduate/graduate courses in Biotransport Engineering. Presenting engineering fundamentals and biological applications in a unified way, this text provides students with the skills necessary to develop and critically analyze models of biological transport and reaction processes. It covers topics in fluid mechanics, mass transport, and biochemical interactions, with engineering concepts motivated by specific biological problems.




Modeling of Microscale Transport in Biological Processes


Book Description

Modeling of Microscale Transport in Biological Processes provides a compendium of recent advances in theoretical and computational modeling of biotransport phenomena at the microscale. The simulation strategies presented range from molecular to continuum models and consider both numerical and exact solution method approaches to coupled systems of equations. The biological processes covered in this book include digestion, molecular transport, microbial swimming, cilia mediated flow, microscale heat transfer, micro-vascular flow, vesicle dynamics, transport through bio-films and bio-membranes, and microscale growth dynamics. The book is written for an advanced academic research audience in the fields of engineering (encompassing biomedical, chemical, biological, mechanical, and electrical), biology and mathematics. Although written for, and by, expert researchers, each chapter provides a strong introductory section to ensure accessibility to readers at all levels.




Concepts and Models


Book Description




Concepts and Models


Book Description

This Volume forms the cornerstone of this series of four books on Membrane Transport in Biology. It includes chapters that address i) the theoretical basis of investigations of transport processes across biological membranes, ii) some of the experimental operations often used by scientists in this field, iii) chemical and biological properties common to most biological membranes, and iv) planar thin lipid bilayers as models for biological membranes. The themes developed in these chapters recur frequently throughout the entire series. Transport of molecules across biological membranes is a special case of diffu sion and convection in liquids. The conceptual frame of reference used by investigators in this field derives, in large part, from theories of such processes in homogeneous phases. Examples of the application of such theories to transport across biological membranes are found in Chapters 2 and 4 of this Volume. In Chapter 2, Sten-Knudsen emphasizes a statistical and molecular approach while, in Chapter 4 Sauer makes heavy use of the thermodynamics of irreversi ble processes. Taken together, these contributions introduce the reader to the two sets of ideas which have dominated the thinking of scientists working in this field. Theoretical consideration of a more special character are also included in several other Chapters in Volume I. For example, Ussing (Chapter 3) re-works the flux ratio equation which he introduced into the field of transport across biological membranes in 1949.







Electrical Potentials in Biological Membrane Transport


Book Description

The material of this volume was originally planned to be incorporated in the preceding monograph Mechanics and Energetics of Biological Transport. A separate and coherent treatment ofthe variety of bioelectrical phenomena was considered preferable, mainly for didactic reasons. Usually, the biologist has to gather the principles of bioelectricity he needs from different sources and on different levels. The present book intends to provide these principles in a more uniform context and in a form adjusted to the problems of a biol ogist, rather than of a physicist or electrical engineer. The main emphasis is put on the molecular aspect by relating the bioelectrical phenomena, such as the membrane diffusion potentials, pump potentials, or redox potentials, to the properties of the membrane concerned, and, as far as pOSSible, to specific steps of transport and metabolism of ions and nonelectrolytes. Little space is devoted to the familiar and widely used representation of bioelectrical phe nomena in terms of electrical networks, of equivalent circuits with batteries, resistances, capacities etc. In order to elucidate the basic principles, the formal treatment is kept as simple as pOSSible, using highly Simplified models, based on biological systems. The corresponding equations are derived in two ways: kinetically, i. e. in terms of the Law of Mass Action, as well as energetically, i. e. , in terms of Nonequilibrium Thermodynamics.




Mechanics and Energetics of Biological Transport


Book Description

This book deals with energetics of transport processes, largely expressed in terms of the thermodynamics of irreversible pro cesses. Since at the present time too little is known about the molecular mechanism of transport, the present treatment is based largely on hypothetical models. Care has been taken, however, to define the crucial features of these models as generally as pos sible, so that the equations do not depend too much on hypotheti cal details. Accordingly, most equations, though developed on the basis of a mobile carrier (ferryboat) model, should apply equally to a conformational model, with an appropriate reinterpretation of the symbols. To better elucidate the essentials, the models are greatly simplified by special assumptions. Maximally, only two flows are assumed to be present in each model at one time: e. g. , two solute flows, the flow of solvent and of one solute, the flow of solvent and of heat. The simplifying assumptions may often be unreal. Hence the equations should not be applied un critically to actual mechanisms. They may at best serve as a ba sis on which the more appropriate equations may be developed. The book is not designed to give a complete kinetic analysis of the transport processes described. The kinetic equations are kept to the minimum required to describe the model concerned and to relate it to the corresponding thermodynamic equations. The in tention is to stress the close relationship between bioosmotic (transport) and biochemical processes in metabolism.




Biomedical Mass Transport and Chemical Reaction


Book Description

Teaches the fundamentals of mass transport with a unique approach emphasizing engineering principles in a biomedical environment Includes a basic review of physiology, chemical thermodynamics, chemical kinetics, mass transport, fluid mechanics and relevant mathematical methods Teaches engineering principles and mathematical modelling useful in the broad range of problems that students will encounter in their academic programs as well as later on in their careers Illustrates principles with examples taken from physiology and medicine or with design problems involving biomedical devices Stresses the simplification of problem formulations based on key geometric and functional features that permit practical analyses of biomedical applications Offers a web site of homework problems associated with each chapter and solutions available to instructors Homework problems related to each chapter are available from a supplementary website (