Repair of DNA Double-strand Breaks in G1-phase Cells


Book Description

The two main DNA double-strand break (DSB) repair pathways are non-homologous end joining (NHEJ) and homologous recombination (HR). DNA ends are normally resected to form single-stranded overhangs to initiate HR, but resection severely limits repair by NHEJ. In G1-phase cells, NHEJ is the primary DNA DSB repair pathway, so DNA end resection must be restricted in these cells to prevent aberrant repair. Antigen receptor gene assembly occurs in G1-phase lymphocytes, using DNA DSB intermediates to generate a variable exon required for antigen binding. We show that the histone H2A variant, H2AX, which is phosphorylated by ATM kinase to generate gamma-H2AX in chromatin flanking DSBs, prevents the earliest steps of resection at RAG DSBs and other genotoxic DSBs in G1-phase lymphocytes. This gamma-H2AX function relies on its downstream factors MDC1 and RNF8 to concentrate 53BP1 at chromatin flanking the DSB, preventing the activity of resection machinery that can act in G1-phase cells. Resection in G1 is dependent on the protein CtIP, which has been previously shown to promote resection in S-G2 phases of the cell cycle. KAP-1 is a multifunctional adaptor protein that is involved in transcriptional silencing and maintenance of heterochromatin recently been implicated in repair of heterochromatic DNA DSBs. Here, we show that KAP-1 has a role in repair outside of heterochromatin, as it also promotes resection at RAG DSBs, along with CtIP. We have unexpectedly discovered that human KAP-1 blocks resection in mouse G1-phase lymphocytes in a dominant manner. The basis for this difference between human and mouse KAP-1 is a single amino acid polymorphism specific to primates located in a disordered region of the protein. Thus, we have established KAP-1 as part of the resection machinery in G1-phase cells that must be restricted by gamma-H2AX and 53BP1 to prevent resection and aberrant repair of DNA DSBs.




DNA Repair


Book Description

The book consists of 31 chapters, divided into six parts. Each chapter is written by one or several experts in the corresponding area. The scope of the book varies from the DNA damage response and DNA repair mechanisms to evolutionary aspects of DNA repair, providing a snapshot of current understanding of the DNA repair processes. A collection of articles presented by active and laboratory-based investigators provides a clear understanding of the recent advances in the field of DNA repair.




Basic Clinical Radiobiology


Book Description

Basic Clinical Radiobiology is a concise but comprehensive textbook setting out the essentials of the science and clinical application of radiobiology for those seeking accreditation in radiation oncology, clinical radiation physics, and radiation technology. Fully revised and updated to keep abreast of current developments in radiation biology and radiation oncology, this fifth edition continues to present in an interesting way the biological basis of radiation therapy, discussing the basic principles and significant developments that underlie the latest attempts to improve the radiotherapeutic management of cancer. This new edition is highly illustrated with attractive 2-colour presentation and now includes new chapters on stem cells, tissue response and the convergence of radiotherapy, radiobiology, and physics. It will be invaluable for FRCR (clinical oncology) and equivalent candidates, SpRs (and equivalent) in radiation oncology, practicing radiation oncologists and radiotherapists, as well as radiobiologists and radiotherapy physicists.










Silencing, Heterochromatin and DNA Double Strand Break Repair


Book Description

The field of DNA repair is vast and advancing rapidly. Recent investigations have begun to focus on the involvement of chromatin in the repair of broken DNA. Although I have no doubt that many breakthroughs in our understanding of chromatin, chromatin regulation, and DNA repair lie in our future, presently this is a new line in inquiry. As such there are many, many unanswered questions. Indeed, most of the correct questions have probably not even been asked yet. Here I have attempted to present a review of some of the current body of knowledge that may prove relevant to understanding the role of chromatin in DNA repair. Because the volume of research, and the relevant findings, come from a staggering array of labs, systems, and ideas I have focused primarily on findings developed from the study of the budding yeast Saccharomyces cerevisiae. Unfortunately, this means that I have left out a great deal of information. It is my hope, however, that the information I do detail, particularly in Chapter 1, will give a flavor for the scope of the problem and perhaps highlight some of the interesting directions this field is taking, or may one day take. I would also point out that the primary research that is presented herein is not in any way meant to represent the comprehensive scope of research being performed. To understand DNA repair will require investigation from innumerable labs, performed by innumerable researchers, moving in unexpected directions.




New Research on DNA Repair


Book Description

As a major defence against environmental damage to cells DNA repair is present in all organisms including bacteria, yeast, drosophila, fish, amphibians, rodents and humans. DNA repair is involved in processes that minimise cell killing, mutations, replication errors, persistence of DNA damage and genomic instability. Abnormalities in these processes have been implicated in cancer and ageing. This book presents leading-edge research from around the world in this frontal field.




Replicating And Repairing The Genome: From Basic Mechanisms To Modern Genetic Technologies


Book Description

Replicating and Repairing the Genome provides a concise overview of the fields of DNA replication and repair. The book is particularly appropriate for graduate students and advanced undergraduates, and scientists entering the field or working in related fields. The breadth of information regarding DNA replication and repair is vast and often difficult to absorb, with terminology that differs between experimental systems and with complex interconnections of these processes with other cellular pathways. This book provides simple conceptual descriptions of replication and repair pathways using mostly generic protein names, laying out the logic for how the pathways function and highlighting fascinating aspects of the underlying biochemical mechanisms and biology. The book incorporates extensive and informative diagrams and figures, as well as descriptions of a number of carefully chosen experiments that had major influences in the field.The process of DNA replication is explained progressively by starting with the system of a simple bacterial virus that uses only a few proteins, followed by the well-understood bacterial (E coli) system, and then culminating with the more complex eukaryotic systems. In the second half of the book, individual chapters cover key areas of DNA repair — postreplication repair of mismatches and incorporated ribonucleotides, direct damage reversal, excision repair, and DNA break repair, as well as the related areas of DNA damage tolerance (including translesion DNA polymerases) and DNA damage responses. The book closes with chapters that describe the huge impact of DNA replication and repair on aspects of human health and on modern biotechnology.




Regulation of DNA Double Strand Break Repair by Local Chromatin Architecture


Book Description

This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact.




Molecular Genetics of Recombination


Book Description

This work offers a fascinating insight into a crucial genetic process. Recombination is, quite simply, one of the most important topics in contemporary biology. This book is a totally comprehensive treatment of the subject, summarizing all existing views on the topic and at the same time putting them into context. It provides in-depth and up-to-date analysis of the chapter topics, and has been written by international experts in the field.