Design, Synthesis, and Biological Evaluation of Small Molecule and Peptide Quorum Sensing Modulators


Book Description

Many bacteria use small molecule or peptidic signals to assess their local population densities in a process called quorum sensing (QS). The concentration of QS signals in a given environment can be correlated with cell density. Once bacteria reach a sufficiently large population, they can use QS to shift from a unicellular to more of a multicellular existence and modify gene expression levels to initiate a broad range of group behaviors that benefit the growing community. These QS phenotypes include biofilm formation, virulence factor production, swarming, sporulation, conjugation, and bioluminescence, and often play a critical role in mediating pathogenic or symbiotic relationships with a eukaryotic host. For instance, several of the most deadly human pathogens use QS to initiate infections and become virulent only after perceiving that a "quorum" of cells has been reached, thus increasing the probability that the bacterial population can survive the host immune response. Copious questions remain about QS signaling mechanisms and their roles in host-bacteria interactions, specifically in infections. Therefore, methods to block bacterial QS would be valuable to study this signaling process at a fundamental level and could provide a route to the development of novel anti-infective strategies. The goal of this dissertation was to develop non-native molecules capable of intercepting QS signaling in human pathogens, with a primary focus on italicStaphylococcus aureusitalic, italicAcinetobacter baumanniiitalic, italicPseudomonas aeruginosaitalic, italicBurkholderia malleiitalic and italicB. thailandensisitalic. The Gram-positive bacterium italicS. aureusitalic uses QS to regulate an arsenal of virulence factors and phenotypes, and its primary QS signals are cyclic autoinducing peptides (AIPs). I designed and synthesized three collections of AIP analogs using solid-phase synthetic techniques, and evaluated their ability to attenuate QS in italicS. aureusitalic. A set of AIP analogs strongly reduced two virulence traits--hemolysis and the production of toxic shock syndrome toxin-1 (TSST-1). These analogs were then incorporated in polymeric coatings and were found to be active when released from materials of biomedical and consumer relevance. I applied a similar strategy to develop the first reported non-native QS modulators in the Gram-negative bacterium italicA. baumanniiitalic. Gram-negative bacteria commonly use italicNitalic-acyl homoserine lactones (AHLs) for QS. I determined the stereochemistry of the native 3-OH AHL signal used by italicA. baumanniiitalic, and then screened a library of non-native AHLs for QS agonists and antagonists in this human pathogen. Several potent AHL antagonists were uncovered in reporter gene assays, and the most potent were capable of limiting bacterial motility and biofilm production in italicA. baumanniiitalic. Building on this work, I designed and synthesized a set of second-generation AHLs to uncover additional QS modulators in italicA. baumanniiitalic and clarify SARs for non-native AHL activity in italicA. baumanniiitalic and italicP. aeruginosaitalic. A number of 3-OH AHL and triazole-HL analogs were revealed capable of modulating QS in both italicA. baumanniiitalic and italicP. aeruginosaitalic. Lastly, I identified the first non-native AHLs capable of blocking QS in the pathogens italicB. malleiitalic (now classified as a biological warfare agent) and italicB. thailandensisitalic. These compounds are anticipated to similarly modulate QS in italicB. pseudomalleiitalic, which utilizes LuxR-type QS receptors largely identical to those initalic B. malleiitalic anditalic B. thailandensisitalic to regulate virulence.




Acyl-homoserine Lactone Based Modulators for RhlI, a Quorum Sensing Signal Synthase in Pseudomonas Aeruginosa


Book Description

"Gram-negative bacteria use N-acyl-homoserine lactone (AHL) autoinducer based signal system, known as quorum sensing (QS), to modulate the gene expression for such traits as biofilm formation, toxin production, and antibiotic resistance. Therefore, there is great potential in pursuing quorum sensing inhibition (QSI) as a means of achieving antivirulence. Pseudomonas aeruginosa, an opportunistic pathogen commonly found in healthcare-related infections, use two LuxI/R type systems to regulate AHL-based quorum sensing: LasI/R and RhlI/R. LasI (initiator protein/signal synthase) and LasR (receptor) use 3-oxododecanoyl-L-homoserine lactone signal molecule while RhlI and RhlR use butanoyl-L-homoserine lactone autoinducer. Thus far, most of the studies have focused on inhibiting the Las system, in particular by using AHL signal analogs to interfere with signal-receptor binding. Recently, RhlI/R system has gained attention as potentially having greater effect in P. aeruginosa virulence. In this study, we have tested the effect of AHL analogs on RhlI, as product inhibitors with the goal of targeting both RhlI and RhlR for increased potency. Screening of compounds have revealed three variations to have the greatest effect on RhlI inhibition: longer/bulkier acyl- chain, D-stereocenter in the headgroup, and a less polar thiolactone head-group. Surprisingly, the addition of a carbonyl at the C3 position was found to activate the enzyme. Moreover, we measured kinetic constants of RhlI with various acyl-substrates and performed inhibition assays with inert acyl-substrate analogs to determine how RhlI activity changes to variations in the acyl-chain length. We found that the catalytic efficiency of acyl-substrate and inhibition potency of the corresponding inert acyl-substrate analogs surges with increase in the length of the acyl-chain. These patterns suggest that long acyl-chains most likely bind to an alternate binding site with marked increase in both kon and koff rate constants. Our findings with AHL derivatives provide a basis for rational design of quorum sensing inhibitors to better combat P. aeruginosa bacterial infections."--Boise State University ScholarWorks.







Bacterial Biofilms


Book Description

Throughout the biological world, bacteria thrive predominantly in surface-attached, matrix-enclosed, multicellular communities or biofilms, as opposed to isolated planktonic cells. This choice of lifestyle is not trivial, as it involves major shifts in the use of genetic information and cellular energy, and has profound consequences for bacterial physiology and survival. Growth within a biofilm can thwart immune function and antibiotic therapy and thereby complicate the treatment of infectious diseases, especially chronic and foreign device-associated infections. Modern studies of many important biofilms have advanced well beyond the descriptive stage, and have begun to provide molecular details of the structural, biochemical, and genetic processes that drive biofilm formation and its dispersion. There is much diversity in the details of biofilm development among various species, but there are also commonalities. In most species, environmental and nutritional conditions greatly influence biofilm development. Similar kinds of adhesive molecules often promote biofilm formation in diverse species. Signaling and regulatory processes that drive biofilm development are often conserved, especially among related bacteria. Knowledge of such processes holds great promise for efforts to control biofilm growth and combat biofilm-associated infections. This volume focuses on the biology of biofilms that affect human disease, although it is by no means comprehensive. It opens with chapters that provide the reader with current perspectives on biofilm development, physiology, environmental, and regulatory effects, the role of quorum sensing, and resistance/phenotypic persistence to antimicrobial agents during biofilm growth.




Quorum Sensing vs Quorum Quenching: A Battle with No End in Sight


Book Description

Microbial relationships with all life forms can be as free living, symbiotic or pathogenic. Human beings harbor 10 times more microbial cells than their own. Bacteria are found on the skin surface, in the gut and other body parts. Bacteria causing diseases are the most worrisome. Most of the infectious diseases are caused by bacterial pathogens with an ability to form biofilm. Bacteria within the biofilm are up to 1000 times more resistant to antibiotics. This has taken a more serious turn with the evolution of multiple drug resistant bacteria. Health Departments are making efforts to reduce high mortality and morbidity in man caused by them. Bacterial Quorum sensing (QS), a cell density dependent phenomenon is responsible for a wide range of expressions such as pathogenesis, biofilm formation, competence, sporulation, nitrogen fixation, etc. Majority of these organisms that are important for medical, agriculture, aquaculture, water treatment and remediation, archaeological departments are: Aeromonas, Acinetobacter, Bacillus, Clostridia, Enterococcus, Pseudomonas, Vibrio and Yersinia spp. Biosensors and models have been developed to detect QS systems. Strategies for inhibiting QS system through natural and synthetic compounds have been presented here. The biotechnological applications of QS inhibitors (QSIs) in diverse areas have also been dealt with. Although QSIs do not affect growth and are less likely to impose selective pressure on bacteria, however, a few reports have raised doubts on the fate of QSIs. This book addresses a few questions. Will bacteria develop mechanisms to evade QSIs? Are we watching yet another defeat at the hands of bacteria? Or will we be acting intelligently and survive the onslaughts of this Never Ending battle?




Quorum Sensing


Book Description

New developments in researching quorum sensing Microbial growth affects industries as diverse as agriculture, engineering, and medicine, to name a few. As more precise solutions are needed for modern challenges, researchers must understand the mechanisms of microbial growth. Quorum sensing (QS) is an essential part of microbial growth, and this work contains key areas such as signal molecules; mechanisms of signal transfer, role, and type of signal receptors; quorum quenching; characterization of microbial plasmids in quorum sensing; and novel and underexplored molecules involved in QS, along with therapeutic roles of quorum sensing inhibitors. This volume is perfect for researchers working on microbiology or biotechnology.




Nanotechnology in Diagnosis, Treatment and Prophylaxis of Infectious Diseases


Book Description

Nanotechnology in Diagnosis, Treatment and Prophylaxis of Infectious Diseases delivers comprehensive coverage of the application of nanotechnology to pressing problems in infectious disease. This text equips readers with cutting-edge knowledge of promising developments and future prospects in nanotechnology, paying special attention to microbes that are now resistant to conventional antibiotics, a concerning problem in modern medicine. Readers will find a thorough discussion of this new approach to infectious disease treatment, including the reasons nanotechnology presents a promising avenue for the diagnosis, treatment, and prophylaxis of infectious diseases. Provides a comprehensive overview of the use of nanotechnology in the treatment and diagnosis of infectious diseases Covers all common types of infective agents, including bacteria, viruses, fungi, and protozoa, along with their vectors, ticks, mosquitoes, flies, etc. Delivers commentary from an international researcher base, providing insights across differing economic statuses Includes a foundation of basic nanotechnological concepts to aid in designing new strategies to combat several pathogenic diseases and cancer Illustrates the high antimicrobial potential of nanoparticles, ultimately demonstrating how they are a promising alternative class that can be successfully used in fighting a myriad of infections




Implication of Quorum Sensing System in Biofilm Formation and Virulence


Book Description

This book illustrates the importance and significance of Quorum sensing (QS), it’s critical roles in regulating diverse cellular functions in microbes, including bioluminescence, virulence, pathogenesis, gene expression, biofilm formation and antibiotic resistance. Microbes can coordinate population behavior with small molecules called autoinducers (AHL) which serves as a signal of cellular population density, triggering new patterns of gene expression for mounting virulence and pathogenesis. Therefore, these microbes have the competence to coordinate and regulate explicit sets of genes by sensing and communicating amongst themselves utilizing variety of signals. This book descry emphasizes on how bacteria can coordinate an activity and synchronize their response to external signals and regulate gene expression. The chapters of the book provide the recent advancements on various functional aspects of QS systems in different gram positive and gram negative organisms. Finally, the book also elucidates a comprehensive yet a representative description of a large number of challenges associated with quorum sensing signal molecules viz. virulence, pathogenesis, antibiotic synthesis, biosurfactants production, persister cells, cell signaling and biofilms, intra and inter-species communications, host-pathogen interactions, social interactions & swarming migration in biofilms.




The Chemistry of Biofilms and Their Inhibitors


Book Description

This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact.