The Molecular Biology of Physarum polycephalum


Book Description

One landmark in the long history of biological studies on the "slime mold" Physarum polycephalum was the introduction of chemi cally defined growth conditions for the plasmodial phase of this organism in the laboratory of Harold P. Rusch in Wisconsin in the 1950s. A number of investigators began working with Physarum in that era, then dispersed over the world. In the 1950s to 1960s, the regular meetings of Physarum workers in North America were commonly held in Wisconsin. Strong new scientific initiatives in Physarum have grown up independently, from the disciplines of genetics, cytology, photo biology, and biophysics, in countries scattered over the world from Japan to Poland, Germany, France, the Netherlands, Norway, Spain, Turkey, and Great Britain. Infusion of the technical power of contemporary molecular biology--in particular, gene cloning and monoclonal antibodies--has brought these dispersed investigators into mutual communication. It was therefore timely and appropriate to assemble the Physarum community again in Wisconsin after a hiatus of 20 years, at a conference in the Friedrick Conference Center at the University of Wisconsin, Madison, from July 8 to 13, 1985.







Myxomycetes


Book Description

Myxomycetes: Biology, Systematics, Biogeography and Ecology, Second Edition provides a complete collection of general and technical information on myxomycetes microorganisms. Its broad scope takes an integrated approach, considering a number of important aspects surrounding their genetics and molecular phylogeny. The book treats myxomycetes as a distinct group from fungi and includes molecular information that discusses systematics and evolutionary pathways. Written and developed by an international team of specialists, this second edition contains updated information on all aspects of myxomycetes. It incorporates relevant and new material on current barcoding developments, plasmodial network experimentation, and non-STEM disciplinary assimilation of myxomycete information. This book is a unique and authoritative resource for researchers in organismal biology and ecology disciplines, as well as students and academics in biology, ecology, microbiology, and similar subject areas. Cover image used with permission from Steve Young Photography - Written in a simple, concise and relatively non-technical style, allowing for a broad readership within biological, environmental and life science programs at academic and research institutions - Contains the comprehensive body of information available on myxomycetes under one cover, with contributions from the leading authorities in their respective areas of expertise - Provides straightforward, compiled information about myxomycetes and the potential of this group for basic and applied research - Offers completely updated material in every chapter, including new material on barcoding and Physarum polycephalum biological factors




Physarum Machines


Book Description

A Physarum machine is a programmable amorphous biological computer experimentally implemented in the vegetative state of true slime mould Physarum polycephalum. It comprises an amorphous yellowish mass with networks of protoplasmic veins, programmed by spatial configurations of attracting and repelling gradients. This book demonstrates how to create experimental Physarum machines for computational geometry and optimization, distributed manipulation and transportation, and general-purpose computation. Being very cheap to make and easy to maintain, the machine also functions on a wide range of substrates and in a broad scope of environmental conditions. As such a Physarum machine is a 'green' and environmentally friendly unconventional computer. The book is readily accessible to a nonprofessional reader, and is a priceless source of experimental tips and inventive theoretical ideas for anyone who is inspired by novel and emerging non-silicon computers and robots. An account on Physarum Machines can be viewed at http: //www.youtube.com/user/PhysarumMachines.




Advances in Physarum Machines


Book Description

This book is devoted to Slime mould Physarum polycephalum, which is a large single cell capable for distributed sensing, concurrent information processing, parallel computation and decentralized actuation. The ease of culturing and experimenting with Physarum makes this slime mould an ideal substrate for real-world implementations of unconventional sensing and computing devices The book is a treatise of theoretical and experimental laboratory studies on sensing and computing properties of slime mould, and on the development of mathematical and logical theories of Physarum behavior. It is shown how to make logical gates and circuits, electronic devices (memristors, diodes, transistors, wires, chemical and tactile sensors) with the slime mould. The book demonstrates how to modify properties of Physarum computing circuits with functional nano-particles and polymers, to interface the slime mould with field-programmable arrays, and to use Physarum as a controller of microbial fuel cells. A unique multi-agent model of slime is shown to serve well as a software slime mould capable for solving problems of computational geometry and graph optimization. The multiagent model is complemented by cellular automata models with parallel accelerations. Presented mathematical models inspired by Physarum include non-quantum implementation of Shor's factorization, structural learning, computation of shortest path tree on dynamic graphs, supply chain network design, p-adic computing and syllogistic reasoning. The book is a unique composition of vibrant and lavishly illustrated essays which will inspire scientists, engineers and artists to exploit natural phenomena in designs of future and emergent computing and sensing devices. It is a 'bible' of experimental computing with spatially extended living substrates, it spanstopics from biology of slime mould, to bio-sensing, to unconventional computing devices and robotics, non-classical logics and music and arts.




Whole-Body Regeneration


Book Description

This Open Access volume provides a comprehensive overview of the latest tools available to scientists to study the many facets of whole-body regeneration (WBR). The chapters in this book are organized into six parts. Part One provides a historical overview on the study of the WBR phenomena focusing on the primary challenges of this research. Parts Two and Three explore a series of non-vertebrate zoological contexts that provide experimental models for WBR, showing how they can be approached with cellular tools. Parts Four, Five, and Six discuss the future advancements of WBR, reporting about the cutting-edge techniques in genetics and omics used to dissect the underlying mechanisms of WBR, and systems biology approaches to reach a synthetic view of WBR. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and thorough, Whole-Body Regeneration: Methods and Protocols is a valuable resource for scientists and researchers who want to learn more about this important and developing field.




Mitochondrial Genome Evolution


Book Description

Advances in Botanical Research publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences. Features a wide range of reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology and ecology. This thematic volume features reviews on Mitochondrial genome evolution. Publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences Features a wide range of reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology and ecology This thematic volume features reviews on mitochondrial genome evolution




Atlas Of Physarum Computing


Book Description

The slime mould Physarum polycephalum is a large cell visible by the unaided eye. It behaves as an intelligent nonlinear spatially extended active medium encapsulated in an elastic membrane. The cell optimises its growth patterns in configurations of attractants and repellents. This behaviour is interpreted as computation. Numerous prototypes of slime mould computers were designed to solve problems of computational geometry, graphs and transport networks and to implement universal computing circuits.In this unique set of scientific photographs and micrographs, the leading experts in computer science, biology, chemistry and material science illustrate in superb detail the nature of the slime mould computers and hybrid devices. Every photograph or micrograph in this book is of real scientific, theoretical or technological interest. Each entry includes a self-contained description of how the visualised phenomenon is used in the relevant slime mould computer. This atlas is unique in providing the depth and breadth of knowledge in harnessing behaviour of the slime mould to perform computation. It will help readers to understand how exploitation of biological processes has sparked new ideas and spurred progress in many fields of science and engineering.




Biodiversity of Fungi


Book Description

Papers from a workshop held from October 15-19, at the Systematic Mycology Laboratory of the U.S. Dept. of Agriculture in Beltsville, Maryland.




The Nature of Nutrition


Book Description

Nutrition has long been considered more the domain of medicine and agriculture than of the biological sciences, yet it touches and shapes all aspects of the natural world. The need for nutrients determines whether wild animals thrive, how populations evolve and decline, and how ecological communities are structured. 'The Nature of Nutrition' addresses nutrition's enormously complex role in biology, both at the level of individual organisms and in their broader ecological interactions.